Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1673 ATGTTATTTGCATTGCAGGAAACTGAGGAACAATGCATTGAACAATACATTAGACTTAGTCTTATAGGAAATCCAGTGTGCAGTGTTCTCTCAAACACAAACTACTGCCAACTTCAGCAGCAGCCTAAGCACTTAAAGCACTTGCTTGGGGAAGATCTTGGACCATTGAGCATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGTGCTTTAGCACAGGCCAGGCAGAGGAAGGTGCTACTGTCAATATGTTCATTGCTAACAGGTCCTACTGTCAATATGGCATATATGATGGATGGTGATGATGAGTTTATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATTCTAAGAAGAAAAAGAGCAAGATAGAGAACAAGAGAAGGTTTAGTGATGAGCAAATTAGATGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAAGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGTTACTATATGGTTTCAGAACAGAAGGGCAAGATCACTTTTCCTTTTAATGGTCCTTTATATAAAGCATATGTACTTGCCTCCTGAATTTGACAGATCACAAGTTTAG 636 0.3962 MLFALQETEEQCIEQYIRLSLIGNPVCSVLSNTNYCQLQQQPKHLKHLLGEDLGPLSIKELQNLEKQLEGALAQARQRKVLLSICSLLTGPTVNMAYMMDGDDEFIQASKGKNVESFTCSEVALPQNKNSKKKKSKIENKRRFSDEQIRCIFESESKLEPKKKIQLARDLGLQPRQVTIWFQNRRARSLFLLMVLYIKHMYLPPEFDRSQV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1673 211 Pfam K-box region 39 80 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy19g1673 211 Pfam Homeodomain 141 187 IPR001356 GO:0003677
Ahy19g1673 211 Gene3D - 119 189 - -
Ahy19g1673 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 105 188 IPR045224 GO:0003700
Ahy19g1673 211 Coils Coil 58 81 - -
Ahy19g1673 211 PRINTS Lambda-repressor HTH signature 162 171 IPR000047 GO:0003677
Ahy19g1673 211 PRINTS Lambda-repressor HTH signature 171 187 IPR000047 GO:0003677
Ahy19g1673 211 ProSiteProfiles 'Homeobox' domain profile. 152 187 IPR001356 GO:0003677
Ahy19g1673 211 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 105 188 - -
Ahy19g1673 211 SUPERFAMILY Homeodomain-like 129 187 IPR009057 -
Ahy19g1673 211 CDD homeodomain 140 188 IPR001356 GO:0003677
Ahy19g1673 211 SMART HOX_1 137 195 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1673 Ahy-Chr19 62519323 62524263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1673 128 187 Homeobox Transcription Factor Family AT2G46680 65.079 1.00e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ahy19g1673 Homeodomain 1.30E-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1673 K09338 - aip:107619340 359.377