Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1672 ATGTCTTCATCTTTTCCTGTTCTTCCTACATCTGCAGCGCAGGCTTCATCAATAAACTCCAACATCAGAAGTGTTGGTCACATGTTCTCAACCCCTGCTGATTTCCCTGATGATGGCGTGCCATTTCCCACCGCTTCCGAAATCCATTCAACAACACAAGCTTCTCAGCCGCTGCGACAAATTGATGATGTTTCCTGGGGAGCGGATCTGTTCGACAATATTCTTCTGTTTCCTGATAATAACAACGCTCCTTTCCAGAATGATCATACAGTATATAGTGCTCCATACACATCCAGTGATAATCCAAAGGCTGTTGATTTTGAGTGGGTTGATCCCTTCATGTCTGATGATGATCCTCTTCAGCTGAATTGGAACCAGTTTGTCAGTGATACCAATGTAGCAGAGCCAAAACCAAAGGAAAGTCAGTTATCAATACAGCAGCAAGTGCCACCTGTTGAAGCTAACGGTCTTCCAGACTCTGTCTCAACCGCACCCCAAACTAAGCAAAGAATGCGTTGGACTCCGGAGCTTCATGAGGCCTTTGTGGAGGCAGTGAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGAGTCTTGAACCTAATGAGAGTTGAAGGCCTTACCATATATCATGTGAAAAGCCACCTTCAGAAATATAGAACTGCCCGATACAAACCTGAGCCATCAGAAGGAGCTCCTGAGAAAAAGTTGACGGATTCAATTGAAGAAATGAAGCCTCTAGACTTAAAAACGAGTAAGGGGATAACTGAAGCATTGAGATTGCAGATGGAACTTCAAAAGCGGCTTCATGAACAACTTGAGATACAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAACAGATAGAGGGCTCGTCCTCTGCTCCACTATCAAGCACGGGGCTACATACAAATGAAAATTCAGAACCCCAGAACGACGACAATGATAAACAGGAACCCGGAGACGAGCAGTTGATTGCGCCTCCCCCAAAACGGGTTAAAAGTTTATGA 1041 0.4467 MSSSFPVLPTSAAQASSINSNIRSVGHMFSTPADFPDDGVPFPTASEIHSTTQASQPLRQIDDVSWGADLFDNILLFPDNNNAPFQNDHTVYSAPYTSSDNPKAVDFEWVDPFMSDDDPLQLNWNQFVSDTNVAEPKPKESQLSIQQQVPPVEANGLPDSVSTAPQTKQRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMRVEGLTIYHVKSHLQKYRTARYKPEPSEGAPEKKLTDSIEEMKPLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQIEGSSSAPLSSTGLHTNENSEPQNDDNDKQEPGDEQLIAPPPKRVKSL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1672 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 225 IPR017930 -
Ahy19g1672 346 MobiDBLite consensus disorder prediction 297 346 - -
Ahy19g1672 346 Pfam Myb-like DNA-binding domain 170 221 IPR001005 -
Ahy19g1672 346 Gene3D - 167 226 - -
Ahy19g1672 346 SUPERFAMILY Homeodomain-like 166 222 IPR009057 -
Ahy19g1672 346 MobiDBLite consensus disorder prediction 224 244 - -
Ahy19g1672 346 MobiDBLite consensus disorder prediction 297 318 - -
Ahy19g1672 346 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 312 - -
Ahy19g1672 346 Coils Coil 257 277 - -
Ahy19g1672 346 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Ahy19g1672 346 Pfam MYB-CC type transfactor, LHEQLE motif 256 298 IPR025756 -
Ahy19g1672 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 312 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1672 Ahy-Chr19 62370112 62374320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1672 20 344 G2-like Transcription Factor Family AT4G28610 44.633 1.41e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ahy19g1672 Myb_DNA-binding 1.40E-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1672 - - aip:107618959 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1107 16 20044243 20048012 Ahy19g1672 19 62370112 62374320 ECH
Ahy19g1672 19 62370112 62374320 Ahy19g1672 19 62370112 62374320 ECH