Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1658 ATGGCTGCATCGTCTTCCTCAGCATCGCAATCGCATTTCACATATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCACCTCCAGCAATCCGCCGCCACACCGGCGCATTACGCCGCTGCGGTTTATGATGCGGCTCCAGCCGTACAAATCCCTTCGCCTCCGGTCATCGGTCCTGTCTCTCCTGCTCCGGTTTCCGGCGTATACTCCTTACCGCAATATCCGTCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCGCTGGAGAGCGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGAACAAGGTGGAGGCGAAGAAGAAAGCAGTTCCTCGAAAAGCTGCTGGTCAAACATGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGACGATGTTCTTACCAAAGCATTTTCACGTTTCCCTTCCTTTAACATGGCACGGGTTGTCAGAGATAAACGGACTGGGAAAACAAAGGGCTATGGTTTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAATTAAGCAAGAGTAAGTGGAAGGAGAGAACAGATTTCGAGGCCCTGGAAAAACAGAAGAGCCAAACTCACAAGAAACCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA 738 0.5081 MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPAHYAAAVYDAAPAVQIPSPPVIGPVSPAPVSGVYSLPQYPSQQLFERDAQIITPEALESVKAAIASSEAENKVEAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLSKSKWKERTDFEALEKQKSQTHKKPKLPRKGVLHK* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1658 245 SUPERFAMILY RNA-binding domain, RBD 121 217 IPR035979 GO:0003676
Ahy19g1658 245 Gene3D - 87 234 IPR012677 -
Ahy19g1658 245 SMART rrm1_1 138 211 IPR000504 GO:0003723
Ahy19g1658 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Ahy19g1658 245 PANTHER RNA-BINDING PROTEIN 42-LIKE 34 245 - -
Ahy19g1658 245 MobiDBLite consensus disorder prediction 221 245 - -
Ahy19g1658 245 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 34 245 - -
Ahy19g1658 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Ahy19g1658 245 CDD RRM_RBM42 131 213 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1658 Ahy-Chr19 60178256 60182926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1658 139 222 Eukaryotic Initiation Factors Gene Family AT2G23350 30.952 3.79e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1658 K25079 - gmx:100807693 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1658 19 60178256 60182926 Ahy9g1343 9 51032234 51035730 hybridization