Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1648 ATGGCTGACAAAGCGGTTACCATCAGAACAAGGAAGTTTATGACTAACAGGCTCCTCTCCAGAAAGCAATTCGTCATTGATGTTCTTCATCCAGGAAGGGCAAACGTTTCTAAGGCTGAGCTTAAGGAGAAGCTTGCTAGGATCTATGATGTTAAGGACCCCAACACCGTGTTTGTGTTCAAGTTCCGCACCCATTTCGGAGGGGGCAAATCAACTGGTTTTGGTTTGATTTATGACACTGTTGAGAATGCTAAGAAGTATGAGCCTAAGTACAGACTTATTAGGAATGGACTTGATACTAAGGTTGAAAAGTCAAGGAAGCAAATGAAGGAAAGAAAGAACAGGGCAAAGAAGATCCGTGGAGTAAAGAAGACCAAGGCTTCTGATGCTGCCAAGGCTGGAAAGAAGAAATGA 414 0.4324 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1648 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ahy19g1648 137 Gene3D - 1 132 - -
Ahy19g1648 137 MobiDBLite consensus disorder prediction 102 137 - -
Ahy19g1648 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Ahy19g1648 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ahy19g1648 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Ahy19g1648 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Ahy19g1648 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1648 Ahy-Chr19 58613977 58615967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1648 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.879 1.00e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1648 K02974 - gmx:100499852 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1648 19 58613977 58615967 Ahy19g1648 19 58613977 58615967 ECH
Ahy19g1648 19 58613977 58615967 Ahy9g1357 9 54953475 54955386 hybridization
Ahy16g1039 16 18808119 18809844 Ahy19g1648 19 58613977 58615967 PCT
Ahy6g0336 6 4134932 4136765 Ahy19g1648 19 58613977 58615967 PCT
Ahy19g1648 19 58613977 58615967 Ahy16g1039 16 18808119 18809844 PCT
Ahy19g1648 19 58613977 58615967 Ahy6g0336 6 4134932 4136765 PCT