Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1630 ATGCAGGTCATGTCAAATTTACTCTATTTTTGTGGCATGTGCGGAGTGGCAAAGGAAATGTTGCTGAAGTGGTACTATAGCAAGGACATTCGAGGTGGTGCTCAATTCCCAGAGTCAGATATAGTTAAAGCTTGCCGAAGGGGCAAGAAAATGAGGGATACTGTTTGCATAGCTCTTGTTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTGGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATAAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCTGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTGAAATCTCATGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCAACATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCTTGATGAAGTTGGCCGACTTGAAGTTCTTCATATACACACTAAAAACATGAAGCTCTCTGATGATGTTGTGCATGCCATGCTGTGGCTCTGGATGTCTGATGGAAAAGGAAAAGGTAAGGCTAAGGCCACCTCTAGTAAGAGGAAGATATCACAGCCATCTGCTGACTCAGCAGATACAGCACTATCTGAGAGGCAGCTTACTGCAAAGGAAAAGGCTGATCAATCTATGCCTTCCTCTCACCCAGTAAAGTTTGCCAACCTCTACTGTGAATTGAGGTTTTCGCAATTCCTGAAGCAGAACCTCCACGAGGAGAGGGAACTTTATCAGCCGACATGA 1410 0.4426 MQVMSNLLYFCGMCGVAKEMLLKWYYSKDIRGGAQFPESDIVKACRRGKKMRDTVCIALVDDTCEEPKIRMNKVVRWNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDKVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSHAHVIVIGATNRPNSIDPTLRRFGRFDREIDIGVLDEVGRLEVLHIHTKNMKLSDDVVHAMLWLWMSDGKGKGKAKATSSKRKISQPSADSADTALSERQLTAKEKADQSMPSSHPVKFANLYCELRFSQFLKQNLHEERELYQPT* 470
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1630 469 SMART CDC48_2_2 112 178 IPR004201 -
Ahy19g1630 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 387 IPR027417 -
Ahy19g1630 469 SMART CDC48_N_2 13 95 IPR003338 -
Ahy19g1630 469 MobiDBLite consensus disorder prediction 393 418 - -
Ahy19g1630 469 MobiDBLite consensus disorder prediction 403 418 - -
Ahy19g1630 469 CDD AAA 193 356 - -
Ahy19g1630 469 Gene3D - 358 381 - -
Ahy19g1630 469 Gene3D - 33 94 - -
Ahy19g1630 469 SMART AAA_5 223 359 IPR003593 -
Ahy19g1630 469 PANTHER AAA-FAMILY ATPASE 47 381 - -
Ahy19g1630 469 Pfam Cell division protein 48 (CDC48), domain 2 114 175 IPR004201 -
Ahy19g1630 469 SUPERFAMILY Cdc48 domain 2-like 94 186 IPR029067 -
Ahy19g1630 469 Pfam ATPase family associated with various cellular activities (AAA) 227 356 IPR003959 GO:0005524|GO:0016887
Ahy19g1630 469 Gene3D - 185 357 IPR027417 -
Ahy19g1630 469 Gene3D - 95 179 - -
Ahy19g1630 469 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 47 381 - -
Ahy19g1630 469 SUPERFAMILY ADC-like 47 92 IPR009010 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy19g1630 Ahy-Chr19 56554146 56562495 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1630 186 380 Calmodulin-binding Proteins AT3G56690 48.731 6.67e-51 184
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1630 K13525 - gmx:100783508 645.195