Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1544 ATGACCTCCATTTTGCATAACCGTCCAAATGACGCAATTATCCTTCTCTCCTTCTTTCTCTTTCACCTGCTTCTCTTCTTTCCCTTCACCGGAGCACAATCCGATAACAACAACCAAAACAACAATTACTACAACCGTTTCAGCCCTTCCATGGCGATCATAGTTGTAATCCTCGTCTCCGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCTCCGACTCTCCTTCCGCCAGCATCCGCCACCTTGTCGCCACCGGCAGATCCCGCCGTGGTCACCGAGGTCTCGACCCTGCCGTCATCGACTCGTTCCCAACCTTAGAGTACTCAGTCGTAAAAATCCACAAGATTGGAAAGGGAGCACTCGAATGCGCAGTGTGCCTCAACGAGTTTGAAGACACTGAAACGCTGCGTTTGATTCCCAAATGCGACCACGTGTTCCACCCTGAGTGTATCGACGAGTGGCTCGAGTCTCACACCACGTGTCCGGTTTGCAGAGCCGACCTCCTCCCACAACCGGGAGACTCCGTACGCGGCGCCGCCGCCGTCGTGATTCCGGAGTTGGCAAACGACGAGTTGTCCTCGCCGCGCAATTTGGAATCGCGGAACCAAAGCGACGTCGTAGTTGCTGTGGAGCAAGAAAGTGAGAATCTGGAGAGTAATAAGAATGAAAGGGTAAGTGTTGATGAACGGGAAGTATTGTGTTTGAATATGAACCAGGCGTTGAATTTGAACCGCACCAGGGGTTCCCGGTCGGGGAGGCCGAGGAGGTTTCCGAGATCACATTCGACCGGGCACTCGCTGGTCCAACCAGGTGAGGACACAGAGCGGTTCACTTTAAGATTGCCTTTGGAAGTGAGGAAGAAGATTCTAGAACCTCAGTTGAACCGAGCGAGGAGCTTGGTTATTTTGCCGAGAGAAGGGAGCTCAAAGAGGGGTTACCGAACTGGGGGCGGAGAAGGAAGTAGTAGGGGCTGGTCTACAAGGCGGTTAGACCGGGTTTTTAAGTCGGACCGGTGGATTTTCACTATGGCGCCACCGTTTCTCGTTAGGGCGTCGTCAATTAAGTCACCACGGGTGGCTAATAGCGCCGGCGGCGGAAGTTCATCGGCTGCTCCAGCAGCTGCACCACCAGTTCTGACTGCACCAACAGCAACATCAGAAATAGACCATCTACCGGTTTAA 1194 0.5327 MTSILHNRPNDAIILLSFFLFHLLLFFPFTGAQSDNNNQNNNYYNRFSPSMAIIVVILVSALFLMGFFSIYIRHCSDSPSASIRHLVATGRSRRGHRGLDPAVIDSFPTLEYSVVKIHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLESHTTCPVCRADLLPQPGDSVRGAAAVVIPELANDELSSPRNLESRNQSDVVVAVEQESENLESNKNERVSVDEREVLCLNMNQALNLNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPLEVRKKILEPQLNRARSLVILPREGSSKRGYRTGGGEGSSRGWSTRRLDRVFKSDRWIFTMAPPFLVRASSIKSPRVANSAGGGSSSAAPAAAPPVLTAPTATSEIDHLPV* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1544 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 174 IPR013083 -
Ahy19g1544 397 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Ahy19g1544 397 SUPERFAMILY RING/U-box 121 176 - -
Ahy19g1544 397 MobiDBLite consensus disorder prediction 362 397 - -
Ahy19g1544 397 Pfam Ring finger domain 126 169 IPR001841 -
Ahy19g1544 397 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 333 - -
Ahy19g1544 397 CDD RING-H2_EL5_like 126 169 - -
Ahy19g1544 397 MobiDBLite consensus disorder prediction 249 274 - -
Ahy19g1544 397 PANTHER RING FINGER DOMAIN-CONTAINING 16 333 - -
Ahy19g1544 397 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1544 Ahy-Chr19 45693268 45694715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1544 15 376 Rapid Response to Elicitors AT3G05200 43.243 5.55e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1544 K10664 - gmx:100810865 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1544 19 45693268 45694715 Ahy9g1268 9 36375904 36377330 hybridization
Ahy16g0985 16 17730910 17732534 Ahy19g1544 19 45693268 45694715 PCT
Ahy6g0383 6 4802848 4804947 Ahy19g1544 19 45693268 45694715 PCT
Ahy19g1544 19 45693268 45694715 Ahy16g0985 16 17730910 17732534 PCT
Ahy19g1544 19 45693268 45694715 Ahy6g0383 6 4802848 4804947 PCT