Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1474 ATGGGTGCCAGTAACTTATCCTTCGACCAAGTGCTTGTGGAAATGCTTGAAATGGGTTTTGAGTATTCCAGCATTGTAGAAGGCATCAAAACAGTGGGTTTGTCTATTCCCAATGTTGTGGAGCATATCTTGACGGCTGGTAGTGGTAGTGGTAGAGCTACAACTAGCTCCAAAGCTTCCACTACCACCATGCAGCCTTCAAAATTTCGTGCTCCTCATGGAAAAGCTCTCAAGAGAAAAGCTTTGTCCTCGACCAGCCAAGTTCGGCAGTCGAGCATATTGGACCATTTTCATTCCAATGATAAGTCCACTGTGTGCAATAAGATACGTGATGTGGCAATTGTTGATCTAGAAATGGTGAATGAGCACGATAAGCCTATCTCTAAAATGCCTGATGATGTGACCGTGATGCCGGGACAAATTGTAACTGGTCCAATGGAAAATTTGGTTGTTATGTCTGATTGGGAGACGAGAGTTGGTGGTCTCTTACAGAAGCATTTTGGGATTTTGTGTTTGAAGAGTTTTCAGAAGGAAGCGCTGAACGCATGGGCAGCTCATAAGGACTGCCTTGTCCTTGCTGCAACAGGATCTGGGAAATCATTGTGCTTTCAGGTTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATATCGCCATTAATAAGCTTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGAGTCAGCGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTACAGCATAATATATGTTTGTCCAGAGACTGTCCTAAGATTAATACAACCACTGCAGAAGCTTGCAGAAAGTCATGGTATTGCATTGTTCGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGACTATAGCCGATTATCTGTGCTGAGGGAAAATTTCAGCACCAGCAAACTTAAATTCCTGGAATTTGACATACCTTTGATGGCCTTGACAGCTACAGCTACACACAGAGTTCAAGAAGATATTTTAAAATCATTACGCATGTCAAAGGAAACAATTGTTGTGCTTACATCTTTCTTTCGATCTAATTTACGCTTCATGGTAAAGCATAGTGGAACTTCACAAGCCTTTTATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTAGCAAGCTAAATTCCAATAAAAATAAAAAGTCTTCCATCTCAAAGGACTCGGATGATGTTTCCAGCAGCTCTGGTGCTGGTAGAATCTCTAATAATGATGATGTTTCTCCTTATGATGTGGATGACAACCATGATGATTATGGTGGCAGATATGTTAATGTAATGCGCTCAGGAAACACAGACAATCTTGTAAAGGGAAAAGAGTTGTCTGTCGAGTTTCTGGAAAATGACAACGATGACTGTCAAAGCGTGGATGATTGGGATGTTACCTGTGGTGAATTTTGTGCACAATCTCCTCCGAAGGACTGGGAGTTATCTGAGATAGATGATCCACCCAAGGAACCAGAAGGAAGTCTGAAAGTACTTAAAGGTCCTTTGGAGCAAGGACCGGCAATCATATATGTACCAACGAGAAAAGAAACGCTGAAAATTGCAAAGTATCTATGCAAGTTTGGCGTGAAGGCTGCTGCCTATAATGCAGCGCTGCCCAAATCACATCTAAGAAGGGTTCACAAAGAATTTCATGAAAATACCATAGAGGTTGTTGTTGCAACAATAGCATTTGGCATGGGGATTGACAAGCCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGGAAATTAGCAGACTGCATTCTATTTGCAAACCTAGCGAGAGTTCCATCACTTTTGCCTAGTCGAAGAAGTGAATATCAGACAAAACAAGCATATATCATGTTGTCTGACTGTTTCAGATACGGAATGAACACGTCATGCTGTCGAGCAAAGACACTTGTGGAATACTTTGGAGAGGAATTCAGTCATAGAAAATGTCTCTTATGTGATGTGTGTGTTGATGGACCGCCTCAAAGGCAGAATATGAAAGACGAGGCGTGTATATTACTACAAACTATTGCTGCTAGTCATGCATGTAGTTATTCCATGGATGTTGCATATGATGATGATATACATTTTGAATATGGATATGGAAGACATGGAGAGAGGTTGTGCCTTAAGAATATTGTCGGAAAGATACGGGAGCAGTCTCAAAAGTTTCTAAACACTGATATATTATTGTGGAGAGGTCTCTCTCGGATTTTGGAAGCTAAAGGATACATCAGGGAGGGAGATGACAAGACCCATGTTCAGATAAAATTTCCGGAGCCAACAAAATTGGGATTGGAATTTATCAGGTCCATGAGTGAAGAAGCTTTCTATGTTTACCCAGAGGCAGATATGTTGCTTGCAGCGAAAACTCACAAACCATATTCCTCATTCTCTGAATGGGGTAAAGGTTGGGCTGATCCTGAAATCCGTCGCCAGCGTCTGGAAAGAATGCAAGTCAATAAAAAGCCAGAGACGCTGAGAAGTCCCAGGAAACATCAAAAGAGAAAAGCCAATAAAATGAAACACGATATGAGGACTTCTCGCGGAAGACTTGAAGCAAAACTCACAAAATATAAGTGA 2679 0.4166 MGASNLSFDQVLVEMLEMGFEYSSIVEGIKTVGLSIPNVVEHILTAGSGSGRATTSSKASTTTMQPSKFRAPHGKALKRKALSSTSQVRQSSILDHFHSNDKSTVCNKIRDVAIVDLEMVNEHDKPISKMPDDVTVMPGQIVTGPMENLVVMSDWETRVGGLLQKHFGILCLKSFQKEALNAWAAHKDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMHDQCLKLARHGVSACFLGSGQPDNTVEKKAMRGMYSIIYVCPETVLRLIQPLQKLAESHGIALFAIDEVHCVSKWGHDFRPDYSRLSVLRENFSTSKLKFLEFDIPLMALTATATHRVQEDILKSLRMSKETIVVLTSFFRSNLRFMVKHSGTSQAFYEKDFHELIKVYGSKLNSNKNKKSSISKDSDDVSSSSGAGRISNNDDVSPYDVDDNHDDYGGRYVNVMRSGNTDNLVKGKELSVEFLENDNDDCQSVDDWDVTCGEFCAQSPPKDWELSEIDDPPKEPEGSLKVLKGPLEQGPAIIYVPTRKETLKIAKYLCKFGVKAAAYNAALPKSHLRRVHKEFHENTIEVVVATIAFGMGIDKPNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILFANLARVPSLLPSRRSEYQTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEEFSHRKCLLCDVCVDGPPQRQNMKDEACILLQTIAASHACSYSMDVAYDDDIHFEYGYGRHGERLCLKNIVGKIREQSQKFLNTDILLWRGLSRILEAKGYIREGDDKTHVQIKFPEPTKLGLEFIRSMSEEAFYVYPEADMLLAAKTHKPYSSFSEWGKGWADPEIRRQRLERMQVNKKPETLRSPRKHQKRKANKMKHDMRTSRGRLEAKLTKYK* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1474 892 MobiDBLite consensus disorder prediction 48 69 - -
Ahy19g1474 892 Gene3D - 145 364 IPR027417 -
Ahy19g1474 892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 356 IPR014001 -
Ahy19g1474 892 Gene3D - 630 808 IPR036388 -
Ahy19g1474 892 Pfam RecQ zinc-binding 639 688 IPR032284 -
Ahy19g1474 892 MobiDBLite consensus disorder prediction 860 876 - -
Ahy19g1474 892 MobiDBLite consensus disorder prediction 411 425 - -
Ahy19g1474 892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 655 IPR001650 -
Ahy19g1474 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 221 IPR027417 -
Ahy19g1474 892 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 881 - -
Ahy19g1474 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 628 IPR027417 -
Ahy19g1474 892 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 162 377 IPR004589 GO:0004386|GO:0006310
Ahy19g1474 892 MobiDBLite consensus disorder prediction 399 436 - -
Ahy19g1474 892 MobiDBLite consensus disorder prediction 877 892 - -
Ahy19g1474 892 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 4 881 - -
Ahy19g1474 892 Gene3D - 500 625 IPR027417 -
Ahy19g1474 892 MobiDBLite consensus disorder prediction 848 892 - -
Ahy19g1474 892 Pfam DEAD/DEAH box helicase 175 343 IPR011545 GO:0003676|GO:0005524
Ahy19g1474 892 SMART ultradead3 168 373 IPR014001 -
Ahy19g1474 892 CDD DEXHc_RecQ 163 363 - -
Ahy19g1474 892 Pfam Helicase conserved C-terminal domain 516 616 IPR001650 -
Ahy19g1474 892 MobiDBLite consensus disorder prediction 48 68 - -
Ahy19g1474 892 SMART helicmild6 536 617 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1474 Ahy-Chr19 39095826 39102222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1474 508 626 Eukaryotic Initiation Factors Gene Family AT5G11170 26.891 1.22e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1474 K10900 - gmx:100793222 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1474 19 39095826 39102222 Ahy9g1194 9 31336711 31343203 hybridization