Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1463 ATGGGTCTTGGGATGAAATATGACGAAGAAAGCAAGGTGGTTGACGATGGAGGAGAGGGTGGCGGTGGTGGAGCTAATTCGTTTGATTCTGTCTCATGTTCAATTTGCCTTGACGCTGTTATCGATAATGGGGATCGATCGTTGGCTAAGCTTAAATGTGGCCATCAATTTCATCTTGATTGCATTGGTTCAGCATTCAATATGAAAGGAACAATGCAATGCCCTAATTGTCGAAAGATTGAGAAAGGTCAATGGCTTTATGCTAATGGTGGCCGGTCATATCATGATTACAGTATGGATGATTGGACCCATGATGAGGACCTTTATGACCTTAGCTACTCTGAAATGTCCTTTGGAGTTCATTGGTGCCCATTTGGCAACTTGGCGAGACTTCCATCATCTTTCGAGGACGGAGAATTTTCATCAAGTGCATATCATGATATACTGGGAGGACAACATGCTGTATATGCTGAGCATCATAACACAGTTGTAAATTCTGTTAATCATCCTTGCCCATATATTGCATATTTTGGAGCAATACATCCATCTTCCTCCAACTCAGGTGGAAATGTTTCAGAGATTTCCACCTTCAGTCATTGGAATGGTTCATCTGTGCATAGCGACATGCCCACTTCCTACACATATCCTACATTGGATCTTCATTATCATAGTTGGGAACAACATTCCCCTCCTTTCTCTACATACACTAGTCGTCTAGTTGCCGGTGATCGCCGGTCGATATCTCCACGGACTCAAAGGCCATCCAGGGGTGGCTCAGATGTACCAAGATCAAGTTCTTATATGCATCCTCCTGGGGGTCACAGTTCTTCTGGTTCTGTGAGCTCAGTTACTTCCTCAATGCTACCTCCTTATCCTGGTAGCAACGCTCGATCCCGTGATAGAGTTCAAGCGCTTCAAGCTTACTATCAATCACCAAATTCAACTACAACGCGAACACACGTTCCTTCTGGATCCCGAAGATCTGGTAATCATAGTGGATCACCTCAAATTGCACCGGACCAAAGCGGTTTCTTTTTTGTCCCATCAAGTTCTTCAGGTCGTAGTAGTTTTCCAGAAGATGCATGTCTCCCAAGTCGCTACCATGCTTGGGAACGAGAGCACATATCTTCTTTAAGCATTGTTGATAGAGATTCAGCCTGGAGACAATACCGCCAAACTGTTGGTAGGTCAGAACGCTCTAGCAACTATCGATTAAGGCATGGATCCGAAAGAATGCATTCCCATAATCGATGA 1254 0.4426 MGLGMKYDEESKVVDDGGEGGGGGANSFDSVSCSICLDAVIDNGDRSLAKLKCGHQFHLDCIGSAFNMKGTMQCPNCRKIEKGQWLYANGGRSYHDYSMDDWTHDEDLYDLSYSEMSFGVHWCPFGNLARLPSSFEDGEFSSSAYHDILGGQHAVYAEHHNTVVNSVNHPCPYIAYFGAIHPSSSNSGGNVSEISTFSHWNGSSVHSDMPTSYTYPTLDLHYHSWEQHSPPFSTYTSRLVAGDRRSISPRTQRPSRGGSDVPRSSSYMHPPGGHSSSGSVSSVTSSMLPPYPGSNARSRDRVQALQAYYQSPNSTTTRTHVPSGSRRSGNHSGSPQIAPDQSGFFFVPSSSSGRSSFPEDACLPSRYHAWEREHISSLSIVDRDSAWRQYRQTVGRSERSSNYRLRHGSERMHSHNR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1463 417 ProSiteProfiles Zinc finger RING-type profile. 33 78 IPR001841 -
Ahy19g1463 417 MobiDBLite consensus disorder prediction 299 341 - -
Ahy19g1463 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 87 IPR013083 -
Ahy19g1463 417 PANTHER PROTEIN, PUTATIVE-RELATED 21 417 - -
Ahy19g1463 417 SUPERFAMILY RING/U-box 29 80 - -
Ahy19g1463 417 MobiDBLite consensus disorder prediction 400 417 - -
Ahy19g1463 417 MobiDBLite consensus disorder prediction 269 292 - -
Ahy19g1463 417 MobiDBLite consensus disorder prediction 395 417 - -
Ahy19g1463 417 MobiDBLite consensus disorder prediction 244 341 - -
Ahy19g1463 417 SMART ring_2 33 77 IPR001841 -
Ahy19g1463 417 Pfam Ring finger domain 32 78 IPR001841 -
Ahy19g1463 417 PANTHER OS09G0511500 PROTEIN 21 417 IPR044274 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1463 Ahy-Chr19 38068506 38078857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1463 29 78 C3H Transcription Factor Family AT1G53820 40.000 8.65e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1463 - - adu:107465306 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1463 19 38068506 38078857 Ahy9g1183 9 30513435 30523177 hybridization
Ahy16g0933 16 16763046 16767468 Ahy19g1463 19 38068506 38078857 PCT
Ahy6g0430 6 5288403 5293084 Ahy19g1463 19 38068506 38078857 PCT