Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1462 ATGGCTAGACGGTCTAGTCGCACAATTTATGTTGGCAATCTTCCTGGCGATGTTCGCTTGAGGGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATTGTTGACATTGATCTGAAGATTCCTCCGAGACCACCAGGTTATGCCTTTGTGGAGTTTGAGGATATCCGTGATGCTGAAGATGCCATTTACTATAGAGATGGTTACAACTTTGATGGTTTTCGGTTACGGGTTGAACTTGCACACGGTGGACGGGGTCATACATCATCAGTAGACCGCTATAGTAGCTATAGTGGTAGTAGCAGTAGCCGTGGAGTTTCCAGGCGTTCCGATTATCGTGTTCTTGTAACAGGATTACCCCCTTCTGCTTCATGGCAAGACCTGAAAGATCATATGCGAAGAGCTGGTGATGTGTGTTTTTCTCAAGTCTTCCGTGAGCGTGGTGGTATGACTGGGATAGTGGATTATACAAATTATGATGACATGAAATATGCTATAAGGAAGCTTGATGACTCGGAATTCAGAAATGCCTTTTCTCGGTCATACATACGGGTCAGAGAATATGATCGCCGGAGTTATTCTAGAAGCCCCAGTCGTGATTCAAGGAGGAGCTATTCGAGAAGCCTCAGCCGCAGTCCATATGTGTCGCGAAGTCGAAGCTATAGTCAAAGCCCTAGCTATAGTGACAGGAGCAGAAGTTGGTCTCCAAAACCAAAGCATTCTCGGCGTTCGTTATCTCGCTCAAGATCTGTCTCAAGATCCAGATCTCCTTATTCATCTCCTCGACCTTACAGTCGTAGCCAAAGTCCAAGGAGCATGTAA 819 0.4567 MARRSSRTIYVGNLPGDVRLREVEDLFYKFGPIVDIDLKIPPRPPGYAFVEFEDIRDAEDAIYYRDGYNFDGFRLRVELAHGGRGHTSSVDRYSSYSGSSSSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYIRVREYDRRSYSRSPSRDSRRSYSRSLSRSPYVSRSRSYSQSPSYSDRSRSWSPKPKHSRRSLSRSRSVSRSRSPYSSPRPYSRSQSPRSM* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1462 272 MobiDBLite consensus disorder prediction 84 105 - -
Ahy19g1462 272 MobiDBLite consensus disorder prediction 188 272 - -
Ahy19g1462 272 CDD RRM1_SF2_plant_like 8 79 - -
Ahy19g1462 272 MobiDBLite consensus disorder prediction 249 272 - -
Ahy19g1462 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Ahy19g1462 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Ahy19g1462 272 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Ahy19g1462 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Ahy19g1462 272 MobiDBLite consensus disorder prediction 188 205 - -
Ahy19g1462 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 259 - -
Ahy19g1462 272 SMART rrm1_1 112 183 IPR000504 GO:0003723
Ahy19g1462 272 SMART rrm1_1 8 78 IPR000504 GO:0003723
Ahy19g1462 272 CDD RRM2_SF2_plant_like 111 186 - -
Ahy19g1462 272 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 259 - -
Ahy19g1462 272 MobiDBLite consensus disorder prediction 88 105 - -
Ahy19g1462 272 MobiDBLite consensus disorder prediction 206 231 - -
Ahy19g1462 272 Gene3D - 1 110 IPR012677 -
Ahy19g1462 272 Gene3D - 111 188 IPR012677 -
Ahy19g1462 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1462 Ahy-Chr19 38060530 38068714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1462 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 2.27e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1462 K12890 - gmx:100794282 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1462 19 38060530 38068714 Ahy19g1462 19 38060530 38068714 ECH
Ahy19g1462 19 38060530 38068714 Ahy9g1182 9 30504180 30511791 hybridization