Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1460 ATGGGACTGCTCACTGCTAAAGGAGATATTAATGATTTCTCAAGAAATGGAAAGAAATCAATCTACATCGTGGTCGAGCTAGATGACATGGAGGGACATGACAAGATCAGGTGCACCCTATGGGAGGAATTTGTTACAAAATTGGTCAAACATATTGAGAAACAGAAAACCTCTGAGTATATTATCATTATGCAGTTTGCAAAATTCAACATGTTCAAAGGGACTTTGGGTATATCAAATACCAATTATAATTCCATTCTTTATATCAATCTTGACTTTCAAGAGGTTAAGGATTTCAGAAAAAGAATTATAATGTTCGGAGTCCCTTTTTCAAATCAGTTGAGCAAAATTGCTGCAGATCCTGCCTACAATCTTGAAGATGATCTCCTTAACCAATCCACATATAAGCCTATATGCGAGCTGAAAGAGTTATTTGAGGATGGTTCATTTGTTACTATTGGAACTATTGTTGCCCTCGATTCAAATAATGGTTGGTGGTATAAGGGATGTAAACAATGTTTTCATTCACTAAAAGAAGCTGATAATTCTTATCATTGTACTATTTGTGATACTTTTCCAACCTCTCATACTCCAAGGTATAGCATTAATTTAAGGGTTGCCGATGACACGAACACAACATCATTTATTATATATGACAAGGAAGCAACTAAATTCTTTGGATCTACTGCTTCTGAACTTAGGCTTGCTCAGTTAACCAGGGGTGGGATAAATGAGAAATATCCCATTGAGTTGGACTCCTTTAAGAATAAGAAGTTCTTATTCAAGGTTTCTGTTAAGATTGAAGATATTAATTCCTTCCAACCATGCAAGATAATAGTCATAAAGATATGTGGAGAGATTTCTATTATTTTTGCCTTTGTGGACAAGTATAACATATACGATAAAAACCTTGGTTCTGAGAATTCTGAACTTATGAGCATCCAAACTGGTTCAACTTATACTATTAAGGGATCTTCTTCTTCATTTGCAGAGATTTTGGGTGATGATAATAATGACTCATTCACAACACCAAAGAACAGATTAATTCCTACTGGATTGTCAGAAAAGTTGATTGATCTGTATCCTGCTAATGTCTCATCATCCAAGTGTAGAAAAGTTATTATTGATGAAGAGGGAATGGTTGAAAAACTTCATGAAGATTAG 1164 0.3462 MGLLTAKGDINDFSRNGKKSIYIVVELDDMEGHDKIRCTLWEEFVTKLVKHIEKQKTSEYIIIMQFAKFNMFKGTLGISNTNYNSILYINLDFQEVKDFRKRIIMFGVPFSNQLSKIAADPAYNLEDDLLNQSTYKPICELKELFEDGSFVTIGTIVALDSNNGWWYKGCKQCFHSLKEADNSYHCTICDTFPTSHTPRYSINLRVADDTNTTSFIIYDKEATKFFGSTASELRLAQLTRGGINEKYPIELDSFKNKKFLFKVSVKIEDINSFQPCKIIVIKICGEISIIFAFVDKYNIYDKNLGSENSELMSIQTGSTYTIKGSSSSFAEILGDDNNDSFTTPKNRLIPTGLSEKLIDLYPANVSSSKCRKVIIDEEGMVEKLHED* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1460 387 PANTHER REPLICATION FACTOR A 1, RFA1 26 228 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy19g1460 387 Gene3D - 1 107 IPR012340 -
Ahy19g1460 387 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 26 228 - -
Ahy19g1460 387 SUPERFAMILY Nucleic acid-binding proteins 135 283 IPR012340 -
Ahy19g1460 387 CDD RPA1_DBD_C 140 271 IPR013955 -
Ahy19g1460 387 SUPERFAMILY Nucleic acid-binding proteins 1 103 IPR012340 -
Ahy19g1460 387 CDD RPA1_DBD_B_like 1 102 - -
Ahy19g1460 387 Pfam Replication factor-A C terminal domain 151 283 IPR013955 -
Ahy19g1460 387 Gene3D - 128 289 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1460 Ahy-Chr19 38026706 38028620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1460 31 280 Core DNA Replication Machinery Family AT5G08020 23.755 7.93e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1460 - - aip:110266823 776.933