Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1446 ATGACGACCAACCTTGAAGAAAGTGCAGAGGCGAAGCGGAGAATCGCCGTCATAGGCATATCTACTGTCATACTTGTCGCTATGGTGGTGGCAGTTACCGTCGGTGTCAGTCAAGTCGACGGGGACGAAAAAAACACGAAAAACACAAACCATGTGGCTTCGACGGTGAAAGCAGTGAAAGCCCTTTGCCAACCAACAGATTATAAGGAAGAGTGTGAGGAAAGCCTAACTGCCGAAGCTGGCAACACCACGGACCCAAGAGAACTTATCAAGATTGCATTTAATGTAACCATTAACAAGATTGGTGATGGGCTCCAGAAATCACATCTCTTGCAAGAGGTTGAGAACGAACCTAGGGCCAAGATGGCGCTTGACACGTGTAAGCAGCTCATGAATCTCTCTATTAGCGAGTTTTCGAGGTCACTTGAGAGAATAGGACAGTTTAATCTCAACAACCTCGACGAAATCCTCACTAGCCTAAAGGTATGGCTCAGCGGAGCGGTGACATATCAAGAGACATGTTTGGATGGTTTTGAGAACACAACAAGCAAAGCTGGTGAAAAGATGAAGGAAGCGTTGACCAATGCGACGAAGATGAGCAGCAATGCCCTAAGCATAATCACGGAACTCGCAAATACTTTCTCAGAGTTGAACGAAACGCGGCAAGACAGCTCTCATCGTCGCCTCAAGGATGAGTTCCCATCGTGGGTTGACAATGGTGCTGGTGTACGTAGACTCCTTCTATCGAGTTCACGCAAGCTGAAGCCCAATGTGATTGTGGCCAAAGATGGCAGCGCAAAGTTCACTAGCATCAATCAGGCTTTGAAGAATGTTCCTCAGAAGAACATGAAGCCATTTGTGATATTCATCAAGAAAGGTGTTTACAAAGAGTATGTTGAGGTTACCAGGGAGATGAGACATGTCGTCTTTGTTGGTGAAGGTGGCGACAAGACACGAATCACTGGCAACAAAAACTTCATTGATGGGACCAACACTTATAAAACTGCTACAGTAGCAATTCAAGGAGATTACTTTATCGCCATCAACATGGGGTTTGAGAACTCTGCAGGTGCCCATAAACATCAAGCAGTAGCAGTAAGGGTCCAAGCAGACAAGTCTATCTTTTACAAATGCTCGTTCGATGGCTACCAAGACACACTCTATGCTCACACCATGCGTCAATTCTACCGAGACTGCACCATCTCAGGTACCATCGATTTCATCTTCGGCGACGCCGTCACCGTCTTCCAAAACTGCACCTTCGTGGTCCGGAAGCCCATGCAGAACCAGCAATGCATCGTGACGGCGCAAGGCCGCAAGGAGAAGCACCAACCTTCAGGAATAGTAATCCACGGCGGCTCGATTGTGGCGGAGCCAGGAGAATCAAAGGACCACAAGAACGTGAAGTTCGATAGCAAGGCTTACTTAGCGCGTCCATGGAAGAATTACTCAAGGACGGTGTTCTTGCAAACATACATCGGAGATTTGATTGAACCCGAAGGGTACATGCCTTGGCAAGGGCCAGAAGGTAATACCGGCATGGATACTTGTTACTATGCAGAGTTCAATAACATTGGCCCTGGTTCAAATGCAACGAAGCGCGTGAAATGGCATGGTGTCAAGCACCTCACGGAAAAATCTGTAGGTGCTTTCTTCCCATCCAAGTTCTTCCATGGTGACGATTGGATTAGGTTTACTAAGGTTCCTTACTCCCCAGGCTTAACTAATTTCACGAAGCACAAAATTTAA 1749 0.47 MTTNLEESAEAKRRIAVIGISTVILVAMVVAVTVGVSQVDGDEKNTKNTNHVASTVKAVKALCQPTDYKEECEESLTAEAGNTTDPRELIKIAFNVTINKIGDGLQKSHLLQEVENEPRAKMALDTCKQLMNLSISEFSRSLERIGQFNLNNLDEILTSLKVWLSGAVTYQETCLDGFENTTSKAGEKMKEALTNATKMSSNALSIITELANTFSELNETRQDSSHRRLKDEFPSWVDNGAGVRRLLLSSSRKLKPNVIVAKDGSAKFTSINQALKNVPQKNMKPFVIFIKKGVYKEYVEVTREMRHVVFVGEGGDKTRITGNKNFIDGTNTYKTATVAIQGDYFIAINMGFENSAGAHKHQAVAVRVQADKSIFYKCSFDGYQDTLYAHTMRQFYRDCTISGTIDFIFGDAVTVFQNCTFVVRKPMQNQQCIVTAQGRKEKHQPSGIVIHGGSIVAEPGESKDHKNVKFDSKAYLARPWKNYSRTVFLQTYIGDLIEPEGYMPWQGPEGNTGMDTCYYAEFNNIGPGSNATKRVKWHGVKHLTEKSVGAFFPSKFFHGDDWIRFTKVPYSPGLTNFTKHKI* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1446 582 Pfam Pectinesterase 257 560 IPR000070 GO:0030599|GO:0042545
Ahy19g1446 582 PANTHER PECTINESTERASE 14 575 - -
Ahy19g1446 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
Ahy19g1446 582 CDD PMEI-like_3 61 212 - -
Ahy19g1446 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 210 IPR006501 GO:0004857
Ahy19g1446 582 SUPERFAMILY Pectin lyase-like 255 573 IPR011050 -
Ahy19g1446 582 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Ahy19g1446 582 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Ahy19g1446 582 Gene3D - 251 574 IPR012334 -
Ahy19g1446 582 SMART PMEI_2 54 206 IPR006501 GO:0004857
Ahy19g1446 582 PANTHER PECTINESTERASE 14 575 - -
Ahy19g1446 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 210 IPR035513 -
Ahy19g1446 582 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1446 Ahy-Chr19 37173661 37176613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1446 1 574 Carbohydrate Esterase AT3G05610 50.865 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1446 K01051 - gmx:100794799 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1446 19 37173661 37176613 Ahy9g1168 9 29846334 29850864 hybridization
Ahy16g0920 16 16499916 16502367 Ahy19g1446 19 37173661 37176613 PCT
Ahy6g0444 6 5412248 5414708 Ahy19g1446 19 37173661 37176613 PCT