Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1422 ATGGGTCGCATGAACACCAAAGAGAAAGAGCACGATCTCGAGTTGGAAAAAGCTCGCTTGATTAGCTTAGCCCTCGATTTCGGCTTCGACCAACCCTCCGCCACCAAATGCCTCCATCGCCTCATCGACCTCTACGGGGAGGATGGTCGGGATTTCATCACGGTGGAGCACTGCGGCGACGATTTTATTGCGGCGTTGGCGGAGTCGATGGAAGATGCAGAAGAATGGGATGATTTGCAGGGACTGGAATCGGAGGCGTGTGGTGCATTGACTCAGGTGCTTCACAAGACTGGTGTTGGTGGTGGTGGTGATGGTGAGGTTTTCTGCGTTGATGCGACTGATGATTCGCCTTGGCGGCAGAAGCAGAAGGGGAAAGTGGTGGAGTTGGTTTCGAGCGAGGAGGATGAAGATGAGGATGTGGATTTCAGTTTTCTGATGGGAAGAGGGAATTGTGTCACTCCTGCTTCTGCGAAATCAATGGATTGCAGAAGTGGCATCACTCAAGGCTCAATTTCATCCACATCCAGCAAAACAAAATTCTACTCAGCATCAAAGGAAGAAAATAATACTCTTAGCTATGACGAATTGCAGGCTCTAGATGATATTGAATTGGCAAATGTCGTTATCTTTGGTAATAGGGCATTTCGACCATTGCAGCATCAAGCATGCAAAGTAACTCTGGCAAAGCAAGATTCTTTTATCCTTATGCCTACTGGAGGTGGTAAATCTCTATGCTATCAGCTTCCAGCAACACTTCAACCAGGTGTTACAGTAGTTATATCTCCCTTACTTTCACTCATTCAGGATCAGATAATCACACTAAACCTTAAGTTTGGTATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAAGCAGCAGCTGTCCTCCAAGAGCTAAGGAAAGACAAACCATCTTGCAAGCTATTGTATGTGACACCTGAGAGAATTGCTGGCAACCAACCATTTATTGAGATTCTTAAATGCCTGCATCGCAAGGGACAACTTGCAGGTTTTGTTGTTGATGAAGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGACTACCGTGGATTAGGATCACTTAAGCAAAACTTTCCTCGTGTACCTGTCATGGCATTGACAGCAACTGCAACCCACTCAGTTCGTGAGGACATTTTGAATGCTTTAAGAATCCCCCATGCACTTGTTCTTGAAAGAAGTTTTGACAGACCAAACTTAAAGTATGAAGTGATTGCAAAGACTAAGGAACCGCTGAAGCAGCTGGGACAGCTGCTAGTGGATCGTTTCAGGAATCAGTGTGGAATTGTTTACTGCCTCTCGAAAAGTGAATGTGTCGAGGTCTCAAAATTTTTGAATGAGACATGTCAGACTAAAACAGCGTATTACCATGCTGGCATGGCTGCCCGCCAAAGAGTTGCTGTTCAAAGGAAATGGCATGATGGAGAGGTTCATGTTGTCTGTGCAACTATTGCTTTCGGAATGGGGATAGACAAATCTGATGTTCGCTTCGTTGTCCATAATACAATGTCAAAATCAGTTGAAAGTTATTATCAAGAATCAGGAAGGGCCGGAAGGGATAATCTTCCTGCAGTTTGCATTGTATTGTACCAGAAGAAGGATTTCAGCCGAGTAGTATGCATGATAAGAAATGGTCAAGGATATAAAAAGGAGAGCTTTAAGACAGCAATGGATCAAGCGAAAAAGATGCAACAGTACTGTGAACTTAAGGTTGAATGTCGGAGACAAACTTTACTCAAACACTTCGGAGAATCTTTTGACAGAAAAGGCTGCAAGTATGGATCTAATCCATGTGATAACTGTCTCAACACTGCACTATGA 1851 0.4435 MGRMNTKEKEHDLELEKARLISLALDFGFDQPSATKCLHRLIDLYGEDGRDFITVEHCGDDFIAALAESMEDAEEWDDLQGLESEACGALTQVLHKTGVGGGGDGEVFCVDATDDSPWRQKQKGKVVELVSSEEDEDEDVDFSFLMGRGNCVTPASAKSMDCRSGITQGSISSTSSKTKFYSASKEENNTLSYDELQALDDIELANVVIFGNRAFRPLQHQACKVTLAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVISPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQPFIEILKCLHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHSVREDILNALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKFLNETCQTKTAYYHAGMAARQRVAVQRKWHDGEVHVVCATIAFGMGIDKSDVRFVVHNTMSKSVESYYQESGRAGRDNLPAVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMDQAKKMQQYCELKVECRRQTLLKHFGESFDRKGCKYGSNPCDNCLNTAL* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1422 616 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 338 347 IPR002464 -
Ahy19g1422 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 421 574 IPR001650 -
Ahy19g1422 616 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 209 613 IPR004589 GO:0004386|GO:0006310
Ahy19g1422 616 Pfam Helicase conserved C-terminal domain 424 530 IPR001650 -
Ahy19g1422 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 552 IPR027417 -
Ahy19g1422 616 Gene3D - 172 406 IPR027417 -
Ahy19g1422 616 Gene3D - 407 614 IPR027417 -
Ahy19g1422 616 Pfam RecQ zinc-binding 543 612 IPR032284 -
Ahy19g1422 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 399 IPR014001 -
Ahy19g1422 616 CDD DEXHc_RecQ 209 406 - -
Ahy19g1422 616 CDD SF2_C_RecQ 407 540 - -
Ahy19g1422 616 PANTHER BLOOM SYNDROME PROTEIN 33 614 - -
Ahy19g1422 616 Pfam DEAD/DEAH box helicase 217 385 IPR011545 GO:0003676|GO:0005524
Ahy19g1422 616 PANTHER DNA HELICASE RECQ FAMILY MEMBER 33 614 - -
Ahy19g1422 616 SMART helicmild6 449 531 IPR001650 -
Ahy19g1422 616 SMART ultradead3 211 415 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1422 Ahy-Chr19 34902928 34907872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1422 439 529 Eukaryotic Initiation Factors Gene Family AT5G11170 30.769 3.18e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1422 K10899 - gmx:100806070 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1422 19 34902928 34907872 Ahy19g1422 19 34902928 34907872 ECH