Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1393 ATGGAGAGCGACACGCTTCTTCCTCACACCACTGTTTCTTGGACCGAACACAGCAATGACATTGGAATTTCCATGAATGCCCCTCTCACTTCCTTCAAATCCATACTCCAACCTCCTCCAATTACCATAAACCCCTTCCCGTTCCCACAACAACATACCGTACCCAATCTCACTACTACTGCTGATGATGACAACTTTCTCACACACCAAAACATGGACTCCTTCGCTCCGGAACACTCTTTCTTTACTCCCAAAGCCTCTTTCTTCAACAACAATCCTTTTGATAATGCCTTCGATTTGGGACCTGACATCGGTTTCTTCTTCTCCGGGAACCATTCTTCTCAAACTGGCTCGCCTGATATCCCGCCGGCGACTCGGCTGCTCCCGGCGGGGGCCACCGACGATGATCCCGTGGCGCTGGGTGCTGGATTTGGTGCCTCCGCTGCGTTTGAAATGGAGGCTGTTGGTGGCTCTGGAAACGCTCTGTTTTCGGGCAGGGGAAAGGGATTGGAAGCTTTGGTAGTGAGTAATTTGAAGAGGGTGCAGGAAGTTGAAGAAGCTAGCAATGAGGGTTCAATGTGGAATTCTGAAGAGGATGATGAGAGAACTGATGAGGTGGTGGTTGAGGAGAGTGGGAAGAAGAAGAAGAAGAAGAAGGGGATGCCGTCCAAAAATCTTATGGCGGAGAGGCGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAATATTAGCAAGATGGACAGAGTTTCGATACTTGGAGATGCAATTGACTACATGAAGGAGCTACAGCAGCGGGTCAATGATCTTCAAAATGAACTGGAGTCAACTCCAACTAGCTGTTCGCCATCATCTTCCACCAGCATTCAACCTTTGACACCCACACTGCAAACCCTTTCTTGCCGGGTGAAGGAAGAACTGTGTCCGATGCCAATCCCAGGAAACCAAACAGCAAAGGTGGAAGTTAAGGTAAGGGACGGTAAAGCTATCAATATTCACATGTTTTGTAGCCGCCGACCAGGTCTTCTGGTCTCTACAATGCAGGCTCTGGATAACCTCGGATTAGATGTTCACCAAGCTGTTATTAGCTGCTTCAATGGTTTTGCTTTAGACATCTTTAAAGCTGAGCAATGCAGAGAAGGGCAAGATGTGCTTCCTGAGGAAATCAAAGCAGTTCTGCTGGATTCAGCAGGATCCAAATAA 1221 0.4816 MESDTLLPHTTVSWTEHSNDIGISMNAPLTSFKSILQPPPITINPFPFPQQHTVPNLTTTADDDNFLTHQNMDSFAPEHSFFTPKASFFNNNPFDNAFDLGPDIGFFFSGNHSSQTGSPDIPPATRLLPAGATDDDPVALGAGFGASAAFEMEAVGGSGNALFSGRGKGLEALVVSNLKRVQEVEEASNEGSMWNSEEDDERTDEVVVEESGKKKKKKKGMPSKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRVSILGDAIDYMKELQQRVNDLQNELESTPTSCSPSSSTSIQPLTPTLQTLSCRVKEELCPMPIPGNQTAKVEVKVRDGKAINIHMFCSRRPGLLVSTMQALDNLGLDVHQAVISCFNGFALDIFKAEQCREGQDVLPEEIKAVLLDSAGSK* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1393 406 MobiDBLite consensus disorder prediction 186 226 - -
Ahy19g1393 406 Coils Coil 259 286 - -
Ahy19g1393 406 MobiDBLite consensus disorder prediction 206 226 - -
Ahy19g1393 406 Gene3D - 209 284 IPR036638 GO:0046983
Ahy19g1393 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Ahy19g1393 406 SMART finulus 226 275 IPR011598 GO:0046983
Ahy19g1393 406 Pfam Helix-loop-helix DNA-binding domain 227 270 IPR011598 GO:0046983
Ahy19g1393 406 PANTHER BHLH TRANSCRIPTIONAL FACTOR 184 404 - -
Ahy19g1393 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 290 IPR036638 GO:0046983
Ahy19g1393 406 CDD bHLH_AtAMS_like 223 281 - -
Ahy19g1393 406 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 184 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1393 Ahy-Chr19 32157165 32163280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1393 92 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.729 1.44e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy19g1393 HLH 4.20E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1393 - - ahf:112779394 732.635