Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1352 ATGCCGGCAAGAAAGTTCTACTGTGATTACTGCGACAAGCAGTTTCCGGACACGGCGGCCGATCGGAAGCGACATGAGCGAGGTATTCAGCACCAACAAGCCAAAGCTCGCTGGTATGATTCCTTCAAACATGAACAACAACAGCAGTTTCCTTCTAATGCACCACTACCCCAAGGCATGCCTCAACCTCTTTGCTATAACTTTGTCAACACTGGATTTTGTCGTTATGGTAACTCATGCAAATATCTTCATCCCAATGCCAACAATGCACCACACCCATCAATGATAAGTGCGCCTAATCCGTCAGGAAATATAGTACTACAAGATAGGACAGGGTTGTCATGGGATAATTTGCCTCCATCACTGCAGCCTCCACCAGAGGCTGGATATCCCTCTCTTCCTTTTGTGGACTGGGGATAG 420 0.4738 MPARKFYCDYCDKQFPDTAADRKRHERGIQHQQAKARWYDSFKHEQQQQFPSNAPLPQGMPQPLCYNFVNTGFCRYGNSCKYLHPNANNAPHPSMISAPNPSGNIVLQDRTGLSWDNLPPSLQPPPEAGYPSLPFVDWG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1352 139 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 85 IPR000571 GO:0046872
Ahy19g1352 139 Gene3D Classic Zinc Finger 3 49 - -
Ahy19g1352 139 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
Ahy19g1352 139 SUPERFAMILY beta-beta-alpha zinc fingers 4 53 IPR036236 -
Ahy19g1352 139 SMART c3hfinal6 60 86 IPR000571 GO:0046872
Ahy19g1352 139 Gene3D - 50 104 - -
Ahy19g1352 139 PANTHER NUCLEASE-RELATED 1 139 - -
Ahy19g1352 139 SUPERFAMILY CCCH zinc finger 62 86 IPR036855 GO:0046872
Ahy19g1352 139 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1352 Ahy-Chr19 28815317 28817396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1352 56 98 C3H Transcription Factor Family AT1G04990 44.186 3.23e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy19g1352 zf-U1 7.70E-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1352 K13152 - gmx:100527203 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1352 19 28815317 28817396 Ahy19g1352 19 28815317 28817396 ECH
Ahy19g1352 19 28815317 28817396 Ahy9g1070 9 22516210 22518224 hybridization