Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1318 ATGGGAAGGCACTCTTGCTGCTACAAACAGAAGCTAAGAAAAGGACTCTGGTCCCCAGAGGAAGATGAGAAGCTTCTCAATTATATCACCAACCACGGTCATGGATGTTGGAGCTCTGTCCCCAAACTAGCAGGATTGCAGAGATGTGGGAAGAGCTGCAGATTAAGATGGATAAATTACCTGAGGCCAGATTTGAAGAGAGGAGCATTCTCACAGGAGGAAGAGGATTTGATAATTGAACTCCATGCAGTTCTTGGAAACAAGTGGTCTCAGATTGCAGCACGGTTACCGGGAAGAACCGACAATGAGATAAAGAATCTATGGAACTCTTGCCTCAAGAAGAAGCTGAGGCAAAAAGGGATTGACCCAATCACAAACAAGCCACTCTCCGATGTGGTGCCTATTGAGAATAACAAGAACAAGAAGGAGGAGGAGGAGAAGCCACCAACAACAACAGAAAGGTTTGAAGGGCCTCCTTCTGATTCTGTAGGAGGATACTTTTCCTTCAATTATCAGCAAATGATGAACAATTTTGGAGCAACTCCACAAAACGCCACATCTTCCTCCGCCGTCGGATCGAGTGACACTAACTTTGTTGCTAACAACATTCTAACATGGGAACAAGAAGAGGTAAAATGGTGCGAGTATCTTAACACCCTTTTGCTCAACAACACGGTAGTTCAGAATCATTCTTCTTCTTCTTCTCATTCTGTTATGTATGGTGGTGGTGGTGAGGTTATTACTAAGCCAGAAACAACAAGCTTCATGAGACAAGACTCATCAAGTAGTAGTTGGCACCACCATAGCCAGCAACAACCTCATCAATTCTCAGATATGTATACCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGCCAATCCATGTAG 888 0.4403 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNKWSQIAARLPGRTDNEIKNLWNSCLKKKLRQKGIDPITNKPLSDVVPIENNKNKKEEEEKPPTTTERFEGPPSDSVGGYFSFNYQQMMNNFGATPQNATSSSAVGSSDTNFVANNILTWEQEEVKWCEYLNTLLLNNTVVQNHSSSSSHSVMYGGGGEVITKPETTSFMRQDSSSSSWHHHSQQQPHQFSDMYTKDLQRFSVAFGQSM* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1318 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy19g1318 295 MobiDBLite consensus disorder prediction 136 152 - -
Ahy19g1318 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy19g1318 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy19g1318 295 PANTHER HOMEODOMAIN-RELATED 1 151 - -
Ahy19g1318 295 CDD SANT 17 61 IPR001005 -
Ahy19g1318 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy19g1318 295 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ahy19g1318 295 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ahy19g1318 295 PANTHER MYB DOMAIN PROTEIN 55 200 288 - -
Ahy19g1318 295 SMART sant 66 114 IPR001005 -
Ahy19g1318 295 SMART sant 13 63 IPR001005 -
Ahy19g1318 295 Gene3D - 11 67 - -
Ahy19g1318 295 PANTHER MYB DOMAIN PROTEIN 55 1 151 - -
Ahy19g1318 295 CDD SANT 69 109 IPR001005 -
Ahy19g1318 295 PANTHER HOMEODOMAIN-RELATED 200 288 - -
Ahy19g1318 295 MobiDBLite consensus disorder prediction 255 275 - -
Ahy19g1318 295 Gene3D - 69 151 - -
Ahy19g1318 295 MobiDBLite consensus disorder prediction 127 159 - -
Ahy19g1318 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1318 Ahy-Chr19 27168123 27169810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1318 1 292 MYB Transcription Factor Family AT1G57560 51.948 1.81e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g1318 Myb_DNA-binding 5.50E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1318 K09422 - ath:AT1G09540 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1318 19 27168123 27169810 Ahy9g1046 9 21102642 21104314 hybridization
Ahy16g0838 16 15018511 15020057 Ahy19g1318 19 27168123 27169810 PCT
Ahy6g0514 6 6259497 6261105 Ahy19g1318 19 27168123 27169810 PCT
Ahy19g1318 19 27168123 27169810 Ahy16g0838 16 15018511 15020057 PCT
Ahy19g1318 19 27168123 27169810 Ahy6g0514 6 6259497 6261105 PCT