Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1300 ATGGAAAAATTAATCTTCAGTGTTGTAATATTGCTTTTGAGTTTATTAACCACACAGCATAAAGTAGTAGCATCCTCATCGTGGCAACAAGCTCATGCAACATTCTATGGTGGAAGTGATGCCTCAGATACAATGGGTGGAGCATGTGGGTATGGAAATCTATACACTGATGGTTATGGAGTTAAAACAGCTGCATTGAGTACTGCTTTGTTCAACGATGGCAAGGCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAACAAAAGTGCCACAATGGTGCCTAAAGGGCACTGCCATCACAATTACTGCCACAAATTTCTGTCCTCCAAACTATGCACTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCAAGGCCCCACTTTGACATGTCTCAACCTGCCTTTGAGAAGATTGCCAAGTACAAGGCTGGAATTGTTCCTATTTTCTACAGAAGAGTTGGGTGCAAAAGAACTGGAGGCATTAGATTCACCATTAATGGAATAGACTACTTTGAGCTAGTGCTAATAAGCAACGTGGGTGGGGCAGGAGATATCTCTAAAGTTTGGATCAAAGGGTCCAAAATGAACAACTGGGAAACCATGTCAAGAAATTGGGGCTCTAACTGGCAAAGCTTGAGCTACCTCAATGGCCAGAGCTTGTCATTCAAAATCCAACTCAGCAATGGAAGGATTCGCACAGCATACAATGTGGCACCATCAAATTGGAACTTTGGCCAGTCTTTCACCAGCAACATTCAGTTCTAA 768 0.4284 MEKLIFSVVILLLSLLTTQHKVVASSSWQQAHATFYGGSDASDTMGGACGYGNLYTDGYGVKTAALSTALFNDGKACGGCYQIVCDATKVPQWCLKGTAITITATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFEKIAKYKAGIVPIFYRRVGCKRTGGIRFTINGIDYFELVLISNVGGAGDISKVWIKGSKMNNWETMSRNWGSNWQSLSYLNGQSLSFKIQLSNGRIRTAYNVAPSNWNFGQSFTSNIQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1300 255 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Ahy19g1300 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Ahy19g1300 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Ahy19g1300 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Ahy19g1300 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Ahy19g1300 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Ahy19g1300 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Ahy19g1300 255 PANTHER EXPANSIN-A15 7 255 IPR002963 GO:0009664
Ahy19g1300 255 PANTHER EXPANSIN 7 255 - -
Ahy19g1300 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Ahy19g1300 255 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Ahy19g1300 255 SMART dpbb_1 63 151 IPR007112 -
Ahy19g1300 255 Gene3D - 162 255 IPR036749 -
Ahy19g1300 255 SUPERFAMILY Barwin-like endoglucanases 27 179 IPR036908 -
Ahy19g1300 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Ahy19g1300 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Ahy19g1300 255 Pfam Lytic transglycolase 63 151 IPR009009 -
Ahy19g1300 255 Gene3D - 15 157 IPR036908 -
Ahy19g1300 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1300 Ahy-Chr19 26207104 26209488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1300 1 255 Expansin Gene Family AT4G01630 74.118 1.40e-145 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1300 19 26207104 26209488 Ahy19g1300 19 26207104 26209488 ECH
Ahy19g1300 19 26207104 26209488 Ahy9g1028 9 20469933 20472827 hybridization
Ahy16g0816 16 14733678 14734777 Ahy19g1300 19 26207104 26209488 PCT
Ahy6g0530 6 6467847 6469020 Ahy19g1300 19 26207104 26209488 PCT
Ahy19g1300 19 26207104 26209488 Ahy16g0816 16 14733678 14734777 PCT
Ahy19g1300 19 26207104 26209488 Ahy6g0530 6 6467847 6469020 PCT