Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1279 ATGACAAGAAAGAAGGTGAAGTTGGCTTACATTCCTGATGACTCAGCAAGAAAAGCAACATTCAAGAAAAGGAAGAGGGGAATTCTGAAGAAGGTGAATGAACTCAGCATTCTATGCGGCATTGAAGCTTGTGCTATAATCTCGAACCCTTTCGAATCTGAAGAAGCAGAGGTTTGGCCAGATCCAGAGAGGGCGAAAGAAGTGATTGAGAAGTACAGTAATTCATCTGTGATTGACGAAAGTAAGAACATGAATCAAGAAAGCTTCATGCTGCAGAGAATCGCTAAAGCGAAGGAGTTGCTGAAGAAGAAGCGTAAGGAGAATCGTGAAAAGGAGATGCTTCTTTCTATGTATAAGTACATGAAAAGTGATCAAGAACTACCGGATAACATGACTGTTGCGGATTTGAAACAACTTGATAATCTCATTGATCAGAGCATGAAGGACATTGAAATTAAGATGGTTCTTGAAGATGAAGATGATGATGAATAG 492 0.3963 MTRKKVKLAYIPDDSARKATFKKRKRGILKKVNELSILCGIEACAIISNPFESEEAEVWPDPERAKEVIEKYSNSSVIDESKNMNQESFMLQRIAKAKELLKKKRKENREKEMLLSMYKYMKSDQELPDNMTVADLKQLDNLIDQSMKDIEIKMVLEDEDDDE* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1279 163 PANTHER MADS BOX PROTEIN 2 157 - -
Ahy19g1279 163 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Ahy19g1279 163 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Ahy19g1279 163 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Ahy19g1279 163 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Ahy19g1279 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy19g1279 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy19g1279 163 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Ahy19g1279 163 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy19g1279 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Ahy19g1279 163 Coils Coil 91 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1279 Ahy-Chr19 25556860 25557793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1279 1 150 Type I MADS-box Gene Family AT5G48670 48.344 3.15e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy19g1279 SRF-TF 1.40E-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1279 - - gmx:100792290 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1279 19 25556860 25557793 Ahy19g1279 19 25556860 25557793 ECH