Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1277 ATGGCTGAGAAGAAGCTTGAACTCTTTCGTGCTGGGATGAACCCAACCTCCGTTTACGGAAATGATTGTTTCTTGGAGCAAGTTATGGTAAAAGAAGGATCATCATCAAGTACAAGTAATAGTATCATAACAACAAAGAAGAAAGAAGAAAAAGATAATAATAAACACGAAGCGGCGGCAGCATCACAATTCTCATACACATCTTTGTATAATTCATCATCGTCAGCATCAACAACTACTTTCAAGAAACTAAGAATAGCAGACTCATCATTGTTAAACCAACAAGACTTTGCAGCAGGAAAGCTCATGAATTTTTCCACTTTTTTAAGACCTTCAATGCTTCGTCAGAATAGTTCTGTTTCACGTGATGCTGATAACAACAAAGAAGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGCAATAATAATAAGAGGAAAGTGGTGGATACCGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAACACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTCAAGCGAGAATGATGAAGACATAGAAGATGTTACGAAGGATATTAAGAATGCTCGGCGGGAGGGCAATAATGGAGTCAGAAGAAGCAGGAATGCTGAGACTCATAATTTATATGAAAGGCAGCGAAGAGACAAGATCAACAAGAAACTGCGCGTACTGAAAGATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAGTTAATGGGTATGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATGGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTTATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAAGGTTAATAATCTTTGTACACAACCGCCACTACTTCAGACAACCAATAATATCTCAGCTCTAAAGTAG 1158 0.3964 MAEKKLELFRAGMNPTSVYGNDCFLEQVMVKEGSSSSTSNSIITTKKKEEKDNNKHEAAAASQFSYTSLYNSSSSASTTTFKKLRIADSSLLNQQDFAAGKLMNFSTFLRPSMLRQNSSVSRDADNNKEEPFPEKQLKSVSNNNKRKVVDTGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYSSENDEDIEDVTKDIKNARREGNNGVRRSRNAETHNLYERQRRDKINKKLRVLKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQLMGMRPGINIPCNMAQFNGIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTTHPMLGNNNNKVNNLCTQPPLLQTTNNISALK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1277 385 PANTHER TRANSCRIPTION FACTOR PIF3 140 369 IPR044273 GO:0003700|GO:0006355
Ahy19g1277 385 MobiDBLite consensus disorder prediction 117 141 - -
Ahy19g1277 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Ahy19g1277 385 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 140 369 - -
Ahy19g1277 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 289 IPR036638 GO:0046983
Ahy19g1277 385 SMART finulus 224 273 IPR011598 GO:0046983
Ahy19g1277 385 Coils Coil 189 209 - -
Ahy19g1277 385 CDD bHLH_AtPIF_like 218 280 - -
Ahy19g1277 385 Gene3D - 209 268 IPR036638 GO:0046983
Ahy19g1277 385 Pfam Helix-loop-helix DNA-binding domain 221 267 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1277 Ahy-Chr19 25468356 25471204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1277 28 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.887 1.46e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy19g1277 HLH 7.00E-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1277 K12126 - gmx:100818543 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1277 19 25468356 25471204 Ahy9g1008 9 19903077 19905624 hybridization
Ahy16g0799 16 14306517 14308988 Ahy19g1277 19 25468356 25471204 PCT
Ahy6g0543 6 6667948 6670215 Ahy19g1277 19 25468356 25471204 PCT
Ahy19g1277 19 25468356 25471204 Ahy16g0799 16 14306517 14308988 PCT
Ahy19g1277 19 25468356 25471204 Ahy6g0543 6 6667948 6670215 PCT