Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1270 ATGGGTAAAAGAGGGTCTTCCTGTTCCTCTTCCTCTTCATCTTTCAGCCCTTCTTTCTCAACTGCTTCTTCACATCTTCATGATGATCTTAGTCTTGGACTCAGCATTTCTTCCACTCATCATCAACATCTTCCTTCCTCTATCTCAAGGGGGCAGTGGCAAATCCAATCATCATCACTTGCAAGTACTTCACAAGGTGCTGAATTGGCAAATGATTGCAGTGACCATAACACGTTCTTTGTCAAAGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAACCTTTTAGTTCATGATGGTTACCATGAATTGGTTAAAGCTCTTGAACAAATGTTTGACACTACCATATTCTGGGGAACTGAGTTAGATGCAGTGCAAGCAGAGAGGTGCCATGTTCTAACTTATGAGGATGGAGAAGGGGACTTGATTATGGTTGGAGATGTGCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACCAGGGTTGACACATTTGGATGTTGA 516 0.4225 MGKRGSSCSSSSSSFSPSFSTASSHLHDDLSLGLSISSTHHQHLPSSISRGQWQIQSSSLASTSQGAELANDCSDHNTFFVKVYMEGIPIGRKLNLLVHDGYHELVKALEQMFDTTIFWGTELDAVQAERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVDTFGC* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1270 171 Pfam AUX/IAA family 65 165 IPR033389 -
Ahy19g1270 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 170 IPR003311 GO:0005634|GO:0006355
Ahy19g1270 171 Gene3D - 72 170 - -
Ahy19g1270 171 ProSiteProfiles PB1 domain profile. 78 168 IPR000270 GO:0005515
Ahy19g1270 171 PANTHER AUXIN-INDUCED PROTEIN 5 170 - -
Ahy19g1270 171 SUPERFAMILY CAD & PB1 domains 75 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1270 Ahy-Chr19 25347299 25349137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1270 82 163 B3 DNA Binding Superfamily AT4G23980 35.366 9.01e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy19g1270 AUX_IAA 9.90E-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1270 K14484 - gmx:100784866 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1270 19 25347299 25349137 Ahy19g1270 19 25347299 25349137 ECH
Ahy19g1270 19 25347299 25349137 Ahy9g1001 9 19758239 19760300 hybridization
Ahy16g0798 16 14265040 14265900 Ahy19g1270 19 25347299 25349137 PCT
Ahy6g0544 6 6698133 6698991 Ahy19g1270 19 25347299 25349137 PCT
Ahy19g1270 19 25347299 25349137 Ahy16g0798 16 14265040 14265900 PCT
Ahy19g1270 19 25347299 25349137 Ahy6g0544 6 6698133 6698991 PCT