Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1248 ATGGCAAACGGCAAAGTCGTTGTTTCTGCCGTTTCTATCATCCTTGTGGTTGGTGTTGTCATTGGCACCGTTGCAGTTGTTAGCAACAACAACAGCAGCCATGACCAATTGAAATCCCACAACAAGGCAGTCGAGAAGTTGTGCCAAAACGCAGATGACAAGAAACTTTGCTATGACGTCATTGGCAACGTCAATACCACTGACCCAAAGGATTACGTCTCAGAAGTGGTGAAGAGAACATTGGATACCGTCATCAAGGCATTCAACATGACCGATAGCCTCTCTGTGGAGCATGGCGAGAGTAATCCTGGCATGAAGATGGCCCTTGATGATTGCAAGGACTTGTTGCAATCAGCAACCCACGAACTCGAGGCCTCTATCAACCTTGTCACTGATAACAATTTCGCAAATGTTTACCAGAGTTCCGCTGAACTCAAGAACTGGTTGGGTGCCGTTATTGCCTACCAGCAATCTTGCATGGACGGCTTTGACACCGACGGTGAAAAGAAAGTCCAAACCGAGTTGCAATCTGACAGTTTGGATAGTGTTGGCCAGCTCACTGGCCTTGCTCTTGATGTTGTTTCCGGATTGTCCCACTTCCTTAATGGTCTTGGTTTGAACTTGAACCTCAAACCTGCTTCTAGAAAGCTCCTTGAGGTGGATCATGAGGGATTCCCCACTTGGTTATCTGCCGCAGATCGTAAACTCTTGCAAGACGTCAATAATGTCAGACCTAATGTTGTTGTTGCCAAGGATGGTAGTGGCCAATTTAAGACCGTTTTGGAGGCTATTAACTCTTACCCTAAGAACTTCACTGGTAGATACATTATCTATGTTAAGGCTGGCGTTTATGATGAATACATTACCGTTGACAAGAAGTTCAAGAACTTGTTTATCTATGGTGATGGAAATACAAAGACCATCATCACCGGTCGCAAGAACTTCCATGAGGGTACTAAGACAATGAGAACCGCCACATTCTCTTCCAATGCTGATGATTTTCTTGCCAAGTCAATTGCATTCGAGAATACCGCTGGTGCTGAAGGTCACCAGGCAGTGGCACTCCGTGTGCAGGGAGATCGCTCAGCCTTCTTTGATTGCGCAATGCGTGGTTACCAAGATACACTTTATGCCCACGCCCATCGCCAGTTCTACCGCAACTGTGAAATCTCTGGTACCATCGACTTCATCTTTGGCTATGGTACCACCTTGATCCAAAACTCTAGGATCATTGTGAGGAAGCCCATGTCAAACCAGCAGAACATCGTGGTCGCAGACGGAACTGACCAGAAGAACATGCCTACTGGTATTGTCCTCCAAAATTGTGAGATCATGGCTGATTCCGCCCTCTACCCAGACAGGTTGACAGTGAGGACATTCTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATTGAGAATACCATTGGTGATTTGATCCAGCCACAAGGTTACATCCCATGGAACCCACCAACTGAGGCTAACACTGACAATTGTTTCTTTGCTGAGTTCGGAAACACTGGAGCTGGTGCCAATGCCGGAGCCAGGGCCCCATTTGCAAAAGGACTTATTAGTAAGGATGAGGCTGCTCAATTTCTTGCTGAGCCATGGATCCAAGCTAGCACTTGGGTCCCAGCCACTGGCATTTCATTCGATGCTGGTTTCACCAAGGCTTAA 1683 0.4706 MANGKVVVSAVSIILVVGVVIGTVAVVSNNNSSHDQLKSHNKAVEKLCQNADDKKLCYDVIGNVNTTDPKDYVSEVVKRTLDTVIKAFNMTDSLSVEHGESNPGMKMALDDCKDLLQSATHELEASINLVTDNNFANVYQSSAELKNWLGAVIAYQQSCMDGFDTDGEKKVQTELQSDSLDSVGQLTGLALDVVSGLSHFLNGLGLNLNLKPASRKLLEVDHEGFPTWLSAADRKLLQDVNNVRPNVVVAKDGSGQFKTVLEAINSYPKNFTGRYIIYVKAGVYDEYITVDKKFKNLFIYGDGNTKTIITGRKNFHEGTKTMRTATFSSNADDFLAKSIAFENTAGAEGHQAVALRVQGDRSAFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYGTTLIQNSRIIVRKPMSNQQNIVVADGTDQKNMPTGIVLQNCEIMADSALYPDRLTVRTFLARPWKAFSRAVFIENTIGDLIQPQGYIPWNPPTEANTDNCFFAEFGNTGAGANAGARAPFAKGLISKDEAAQFLAEPWIQASTWVPATGISFDAGFTKA* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1248 560 SMART PMEI_2 39 193 IPR006501 GO:0004857
Ahy19g1248 560 CDD PMEI-like_3 47 198 - -
Ahy19g1248 560 SUPERFAMILY Pectin lyase-like 244 555 IPR011050 -
Ahy19g1248 560 Pfam Plant invertase/pectin methylesterase inhibitor 43 192 IPR006501 GO:0004857
Ahy19g1248 560 Gene3D - 240 557 IPR012334 -
Ahy19g1248 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 195 IPR035513 -
Ahy19g1248 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 198 IPR035513 -
Ahy19g1248 560 PANTHER PECTINESTERASE 5 557 - -
Ahy19g1248 560 Pfam Pectinesterase 246 542 IPR000070 GO:0030599|GO:0042545
Ahy19g1248 560 PANTHER PECTINESTERASE 5 557 - -
Ahy19g1248 560 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Ahy19g1248 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 173 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1248 Ahy-Chr19 24593938 24596008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1248 4 557 Carbohydrate Esterase AT2G47030 39.328 3.91e-131 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1248 K01051 - gmx:100808559 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0920 16 16499916 16502367 Ahy19g1248 19 24593938 24596008 ECH
Ahy19g1249 19 24630427 24632512 Ahy19g1248 19 24593938 24596008 ECH
Ahy19g1248 19 24593938 24596008 Ahy19g1248 19 24593938 24596008 ECH
Ahy19g1248 19 24593938 24596008 Ahy9g0980 9 19095274 19097387 hybridization