Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1235 ATGGTGGCTGAAGCAGAGCTTGTGTGTCAACAGAGCGTGGCGTTGTTGGATGTGAAGTATTTTCCGAACAAAGGGACTGGAATTCACGAGATCGAAGACGCAGCACCCACTGCTATCTCGCCTCCGAGTTTTGACCGAGCTCGACCTTCTGAATCGGTCTCCGCTCAGTTACTCACTTCACAAGATGAAGCCGGACCTACCGAAAGAATCTCAGATGCAGCTCTTGAAAATGCTGTTCTGCAATTTGTTCCCTGCATCCGTTCTGGTAGTTTTGCTGATATTGGGCCACGAAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCACCTTGGATCACTACACACCTTTCCTAAACCGAGTGCTTTCTACGGGGTTTTTGACGGTCATGGAGGACCTGAAGCTGCAGCTTATGTAAGAAAAAATGTAATAAAATTCTTCTTTGAGGATGGTAGTTTCCCACAGACATCTGAAGTAGATAATGTGTTTCTGGAAGAGGTTGAGAATTCCCTAAGGAAAGCATTTCTTTCAGCTGACTCGGCATTGGCTGATGATTGCAGTGTGAACACGTCATCAGGCACCACGGCTCTCACTGCTTTGGTGCTTGGAAGGCTTCTGATGGTGGCCAATGCTGGTGATTGCCGGGCAGTTCTCTGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATATATGCATCAGAGCGGAGGCGAGTTGAAGAATTGGGCGGTTACATAGAAGATGGTTACCTTAATGGGGTTCTGTCCGTTACTCGAGCCCTAGGTGACTGGGACATGAAGTTACCAAAGGGTTCTTCCTCCCCTTTGATTGCAGAGCCTGAGTTCCGACAAATGGTCCTAACAGAGGACGACGAATTCCTCATCATAGGGTGTGATGGCATCTGGGATGTGATGTCAAGTCAGCATGCAGTTAGCCTTGTTCGCAAAGGTCTGAGGCGACACGATGACCCTGATAAATGCGCAAGGGACCTCGTCATGGAGGCATTGCGCTTGAACACATTTGACAACCTCACTGTTATCATTGTTTGCTTCTCTTCCCTTGACAACAATGAGTCCTCTACACCTCCGTCTCCACCTTGCCAGCGGAAAATTAGATGTTGCAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGTTTATTGGAAGGGAGTGCCAGCAACTAA 1203 0.4788 MVAEAELVCQQSVALLDVKYFPNKGTGIHEIEDAAPTAISPPSFDRARPSESVSAQLLTSQDEAGPTERISDAALENAVLQFVPCIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLHTFPKPSAFYGVFDGHGGPEAAAYVRKNVIKFFFEDGSFPQTSEVDNVFLEEVENSLRKAFLSADSALADDCSVNTSSGTTALTALVLGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYASERRRVEELGGYIEDGYLNGVLSVTRALGDWDMKLPKGSSSPLIAEPEFRQMVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPDKCARDLVMEALRLNTFDNLTVIIVCFSSLDNNESSTPPSPPCQRKIRCCSLSAEALCSLRSLLEGSASN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1235 400 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Ahy19g1235 400 Pfam Protein phosphatase 2C 97 349 IPR001932 -
Ahy19g1235 400 MobiDBLite consensus disorder prediction 47 65 - -
Ahy19g1235 400 Gene3D - 74 364 IPR036457 -
Ahy19g1235 400 CDD PP2Cc 86 357 IPR001932 -
Ahy19g1235 400 PANTHER PROTEIN PHOSPHATASE 2C 1 380 IPR015655 GO:0004722|GO:0006470
Ahy19g1235 400 SUPERFAMILY PP2C-like 81 359 IPR036457 -
Ahy19g1235 400 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 380 - -
Ahy19g1235 400 MobiDBLite consensus disorder prediction 33 65 - -
Ahy19g1235 400 SMART PP2C_SIG_2 102 357 IPR001932 -
Ahy19g1235 400 ProSiteProfiles PPM-type phosphatase domain profile. 87 357 IPR001932 -
Ahy19g1235 400 SMART PP2C_4 77 355 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1235 Ahy-Chr19 24246199 24248926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1235 100 396 PP2C-type Phosphatase Gene Family AT3G62260 71.477 8.43e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1235 K14803 - gmx:100819791 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1235 19 24246199 24248926 Ahy19g1235 19 24246199 24248926 ECH
Ahy19g1235 19 24246199 24248926 Ahy9g0968 9 18853423 18856152 hybridization