Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1221 ATGGATGTTAAGGTTATTAAGAAAAGTGAAGGATCACAGGTGCAACAACTTGCAAACGAGATGGGATTAAGAAAAGGTCCATGGACGGTTGACGAGGACGCCATTCTCACCAATTATATCTCCACACACGGTGAGGGTCACTGGAATTCCGTCGCACGTTCTGCAGGATTGAAGAGAAGCGGTAAAAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGACGTGCGCCGTGGAAATATCACACTCCAAGAACAGATATTGATTCTTGACCTCCACTTCCGGTGGTCAAAGATTGCTCAGCACCTGCCAGGAAGAACGGACAACGAAATCAAGAACTACTGGAGGACGAGGGTGATAAAGCAGGCGAAGCAGTTAAAGTGCGACGTTAACAGCAAGCAGTTTAGAGACGCCTTGCGTTACGTGTGGATGCCGCGATTGCTCGAGAGGCTCCACCCTGCACCACAAAAACTCACTAACCAAACCGAACCTGAAACCCAAACCGGAGTTCTTGTTTCTAACCGAAACGGTTCAGATTCCGGACCTTTACTGTGCGCGAAACAGAGCAACTGCCTATCGGACTCGTCGTCGGGACAGAGTGCGAGTGTGGGAAATCAATGGTCAAGTTTCAATAATCAGCTGTTGTTTGAACAGGGGACAAATGGAAATGGTCATAGTTGTGGTGGTGGTGGTGAGTCACTAGAGTATTTGTGGAATGATGAGAATGTGTGGTTCTTGCAACAACAACTTTGCGATGACCTTGAAGTGAAATTCAATTCTCTTGCGTGA 789 0.4753 MDVKVIKKSEGSQVQQLANEMGLRKGPWTVDEDAILTNYISTHGEGHWNSVARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHFRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDALRYVWMPRLLERLHPAPQKLTNQTEPETQTGVLVSNRNGSDSGPLLCAKQSNCLSDSSSGQSASVGNQWSSFNNQLLFEQGTNGNGHSCGGGGESLEYLWNDENVWFLQQQLCDDLEVKFNSLA* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1221 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Ahy19g1221 262 Gene3D - 25 77 - -
Ahy19g1221 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 251 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ahy19g1221 262 Pfam Myb-like DNA-binding domain 78 117 IPR001005 -
Ahy19g1221 262 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Ahy19g1221 262 SUPERFAMILY Homeodomain-like 22 115 IPR009057 -
Ahy19g1221 262 PANTHER MYB TRANSCRIPTION FACTOR 16 251 - -
Ahy19g1221 262 MobiDBLite consensus disorder prediction 155 173 - -
Ahy19g1221 262 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Ahy19g1221 262 CDD SANT 27 72 IPR001005 -
Ahy19g1221 262 ProSiteProfiles Myb-like domain profile. 73 119 IPR001005 -
Ahy19g1221 262 Gene3D - 81 140 - -
Ahy19g1221 262 CDD SANT 82 117 IPR001005 -
Ahy19g1221 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 123 IPR017930 -
Ahy19g1221 262 SMART sant 77 121 IPR001005 -
Ahy19g1221 262 SMART sant 24 74 IPR001005 -
Ahy19g1221 262 MobiDBLite consensus disorder prediction 154 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1221 Ahy-Chr19 23278764 23280204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1221 23 253 MYB Transcription Factor Family AT2G47190 49.407 1.92e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g1221 Myb_DNA-binding 5.10E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1221 K09422 - gmx:778065 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1221 19 23278764 23280204 Ahy9g0953 9 18410134 18411683 hybridization
Ahy16g0746 16 13525628 13527080 Ahy19g1221 19 23278764 23280204 PCT
Ahy19g1221 19 23278764 23280204 Ahy16g0746 16 13525628 13527080 PCT