Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1220 ATGGAGATGGAGTACACAAGCAGTGTTCACATGATCATGAGAAGTTTATCGGATTGTGGCTCTTCAGTAACAAATGGGAGCGAGGAAGATATGGAAATCAGAAAAGGTCCATGGACAGAGGAAGAGGATTCTGCTCTGTTGAACCATATCACCACCTATGGTGAAGGACACTGGAACTCTGTTGCACGCTCTGCAGGTCTAAAACGAAGCGGGAAAAGCTGCAGATTAAGATGGTTAAATTACTTGCGTCCGAATGTTAGACGTGGGAACATCACCCTCGAAGAACAACTCTTGATTCTTGACCTCCATTCGCGATGGGGCAATAGGTGGTCGAAAATAGCAGAACAATTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAGAACGAGAGTGGTGAAGCAGGCGAAGCAACTAAAATGCGACGTCAACAGCAAACAGTTCAGAGACGCGTTGCGCTACGTATGGATGCCGCGCCTTATTGAGCAGATTCAAGCCCAAGGAAGATCCACCATGTGCGTCTCCCAAGCTCGCGAGATAGTTAATCCTGTCACTTCAGTTTCGATGGCTTCGTCTAAATCTTGCTCTTCATTCTCAGGATGTGAACAATTCCAAGCCTCTTCTTCGGTCTCTGATTCTTGTGTGTCTTATTACAGTTTAATGGGTAGTGGAAGTGGTGGGGGTTCTTCAGAGCATGCGGAAAAGGGAGCCACGTCATCATCCACGCCATTTGAACCGGAAAATGGTTTCGGGGGTGCTGATTTGTGGACTGATGAAAACATATGGTTCTTGCAGCAGCAACTTGCTGATGATGATCATCTTTGA 828 0.4662 MEMEYTSSVHMIMRSLSDCGSSVTNGSEEDMEIRKGPWTEEEDSALLNHITTYGEGHWNSVARSAGLKRSGKSCRLRWLNYLRPNVRRGNITLEEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDALRYVWMPRLIEQIQAQGRSTMCVSQAREIVNPVTSVSMASSKSCSSFSGCEQFQASSSVSDSCVSYYSLMGSGSGGGSSEHAEKGATSSSTPFEPENGFGGADLWTDENIWFLQQQLADDDHL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1220 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 266 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ahy19g1220 275 SMART sant 87 135 IPR001005 -
Ahy19g1220 275 SMART sant 34 84 IPR001005 -
Ahy19g1220 275 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Ahy19g1220 275 Gene3D - 92 133 - -
Ahy19g1220 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 21 266 - -
Ahy19g1220 275 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Ahy19g1220 275 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Ahy19g1220 275 MobiDBLite consensus disorder prediction 227 251 - -
Ahy19g1220 275 CDD SANT 92 131 IPR001005 -
Ahy19g1220 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Ahy19g1220 275 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Ahy19g1220 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Ahy19g1220 275 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Ahy19g1220 275 MobiDBLite consensus disorder prediction 227 247 - -
Ahy19g1220 275 CDD SANT 37 82 IPR001005 -
Ahy19g1220 275 Gene3D - 35 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1220 Ahy-Chr19 23244406 23245975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1220 28 272 MYB Transcription Factor Family AT2G47190 51.163 1.10e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g1220 Myb_DNA-binding 9.60E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1220 K09422 - gmx:100777932 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1220 19 23244406 23245975 Ahy19g1220 19 23244406 23245975 ECH
Ahy19g1220 19 23244406 23245975 Ahy9g0952 9 18401033 18402592 hybridization
Ahy6g0592 6 7287009 7288414 Ahy19g1220 19 23244406 23245975 PCT
Ahy19g1220 19 23244406 23245975 Ahy6g0592 6 7287009 7288414 PCT