Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1161 ATGCTGGGAACTAGTGATCAATCAGAAGTCTTTTGTGGTGTTCACTTCGTTCTTTTTGGTTTCAGTCCCGAGGATGAAACCGAGGTTCGGTTCAAGCTTGTGAACGGTGGTGCAGTGGATGAAGGCAAGTACAGTGGAAGTTGCACGCACGTCATTGTCGATAAGATCATATATGATGATCCTGTGTGTATTGCTGCCAGAAACGATGGAAAGACAGTGGTGACTAAATTATGGGTTGATCATAGCTCTGATATTGCAATGCCCGTCGATGCTTCCTCCGTTATGTACAGACCTCTTAAAGATTTAAATGGAATACCTGGTGCCCAGAATTTGGTTGTGTGCTTGACTGGTTATCTACGACAGGATCGTGATGATATTATGACAATGGTTGACCTCATTGGTGCGACATTTCTTAAGCCCTTGGTGGCAAACAGGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGAATGGGAACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAAGTCTGGGCGCTTCTTCCAGAAGAAAATTACAACAAGAGTGGCTATGAACTAGAGATTATGAAGTTAGAAGCTAAGGATTCCGATGAAGAAACTGAAGATTTTGATCTGGGGCAATCTGAGAGGAATATAAGCAGAAGTCCCCTCACTGCAAAATTTGGTGTTGAGGCAACTAGTGGCTTATTAAAATCAGATCGAGAGCTTTCAAGTGCCCAGACAGAATCTACTAGTCTCAAGAATTCACCAAAAGTTGATAATAGTAAAGAATCTTCATTTATTCAAGGTAATAACAACGGAGCTGATAGAGACATAAGCTTTAGTAATGTTGATGAGCCTAAGGCAACGGATAAGTTTCTTGATGTTGCTATAGGTGCTACATCATGTCAGATACCTGAGACAGATGTTAAGATCAGGGAGTCAAAGAAGGCCAATTCTCCAAAGACAGGCTGCCAGGATGTTCTCATAACTGAAAAAGCAGAACCACATGCTGAAACTTTTAATAAGCTGGCCAATGATTTCGGATCACCATCTACTGCAAGTGCTGAAAGGGTCACACATTCTGAAGCAAAGTTCAGTTCTATCAAGTATTATTCTAAGAACAAAAGGGGATTCACTCTTCCAAGGAGCTTAAATGATGGTTTGGATAATGGAGCTGGATCTACTGTGTCACCTTTGGCTGATTTGAAATCAGGTAACAAACATAAAACCCCTTCCAATAAGGTATTAAATGGCAGTGGGGGAATCAAATCAACCAGTGCTAAAGATTCTGGGGATGTGACAATTGGTAAATTGCCGCAAAAGAGGGTAAATGAAGCTGCTTCTAATACATTAAAATCAAGGAAAATTACTTCCGATGCAAAATTATTCATCGAGAAAATCACTTCAGAAAATGGTAAATCTGAAGCACGAAAAGTGACATCTGTGGTTGAGGAACCATCCAAGTCTGAACCCTGTTTTTCTGCTGGAAAAGATAGTTTTGACAAACCCAACAAAAACTCATTTTCTAAATCCATAGCTTCTATATCCAATTCCCTATCATTTGATGAGCCTTTTACAAGAGATACAAGCCCAAAGTCAGCTCGAAGTGATAAAGCCTATCAGACTGAGTCTAAAATTAATGGGAAGCATGAAATCGCGGGTCATGGAATGGAACAAGTTGCTGGTAATGAAGTTGAGCAACACAAACTTGCGAAAAATCTGGAGGGTTCCCCTGACAATAAGAACCCTCTGAATGGGGAATCCCCAAATTTAGATTTAGGCAATGAAGAAAGTACTAAGCTGATTAAAAAATCACCTCGCAAGAAATCAGTTGCCAAGAGAAGTTTTGGCTCTAAGCCAAAAGTTGGTGCTACTGCTAAACAGAAAACACTAGTTTCCTCAAACAGGACCATCCAGCAAGGTGAAGCTGTAAACTTTTCCAGTCGAATCAAAGAGGTACCAATTGACAATGGCGATAAACCTCAACCTATGACTGATGATAATAATAAGTCAGAGGAGCAAGAAACTGTTGTTAAACATGCAGATGATGCCAATGGCAGACTTGAAACTATGGATGATGAAACAGAGGCTCCTGATGATAAATGTGAACTTGAGCTGGGAATGAAACACGATGAAAATAAAAACAAAGCTGATGAAACAGCAGAAAAGTCAGAAGACATGCACCATGTAACAGAATGTGAAGCAGCAGTGCCTGAGAAGGAAACTGCAGAGTTAACTGAAAAAGAGAAGGCACCTTCAGTAGATGACTCAACCATGAAACGCGAAGTAAAACATCAAGTGAAAAAGCGTCCTCTAAGTATTGCCAAGAAGGTCACTGTTGCAAAGGGACTACAGAAATCTAAAGTGGCACTGTCTGAGAATAAGATAAGCATGGAACGGGAAAATGTGGCACGAATGAAATCTGCCAAAGAAGTATCTCATGCTACAGATGCGAGCAACAAATCCTTCGCACCAAGAAAGGCATTTGGAGATTCAAAAGAACAGAAGGAAAATAGACCAATTGATGAGGGAGAGCAGGATATGCCTGAGGCCAAATCTGTTGCCAATCGAACTAATAAATTGAGTTCAAAGCCAGAAAAAATAAATCCCAAGCAAACAGGTTATAATCCACCTATGTCAGAAGCTAACAAAAGATTGAAAACTGAACCACCATGTTTCATATTAACGGGGCATCACTTTCTGAGAAAGGATTTCCAACAATTGATAAAGAAGTTAAAGGGCAAAGTTTGCCGGGATTCTCATCAGTGGTCATATCAAGCAACCCACTTCATAGCACCAGAGCCTCTACGCAGGATAGAGAAATTTTTTGCTGCTGCGGCATCAGGAAGGTGGATTCTGAAAACTGATTTCTTAACTGCTAGCAATCAGGCAGGGGAATTTGTGGAAGAGGAACCTTATGAGTGGCACGATATTGGTCTCAACGAGGATGGCACGATCGATATGGAGGCTCCTAGAAAGTGGCGGCTGCTGAAAGAGCGAACAGGTCATGGTGCCTTCTATGGAATGCGCATTATTGTGTATGGTGACTGCATCACTCCACCTTTGGATACTCTGAAGCGAGTGGTCAAAGCTGGAGACGGAACAATACTAGCTACCTCTCCTCCTTACACGCGCTTCCTTGGTACCGGAATCGACTATGCCATAGTTGCTCCTGGAATGCCACGTGTCGACCTGTGGGTACAAGAGTTCTTAAGATACGAGATACCTTGCATTTCGGCTGACTACTTAGTCGAATATGTATGCAAACCAAGTTCCTCACTTGAGAAACATGTATTATATGACACTCATGCTTGGGCAGAAAGGTCATTTTCCAAACACCAGAATAGAGCAGAAGAGACCACTGATATTGAAGAATCAATTAGTAGCACTCCTGAAAGCAACGATGTAGCTTGTGAAGTTTGTGGATCAAGGGATAGAGGGGACGTGATGCTGATTTGTGGTGATGAGAGTGGTTCTGTTGGTTGTGGAGTTGGTACACATATTGATTGTTGTGACCCTCCACTTATGGATGTTCCTGAGGAGGATTGGTTTTGCTCTAAATGCATTGTTAAACGAAACTGCTCAAACTCTCCCAAGAAAAGGAAAAAGGGTGGCTTCTCCAAGAGTAAGAGGAAGTGA 3657 0.4156 MLGTSDQSEVFCGVHFVLFGFSPEDETEVRFKLVNGGAVDEGKYSGSCTHVIVDKIIYDDPVCIAARNDGKTVVTKLWVDHSSDIAMPVDASSVMYRPLKDLNGIPGAQNLVVCLTGYLRQDRDDIMTMVDLIGATFLKPLVANRVTHLVCYKFEGEKYELAKRMGTIKLVNHRWLEDCLKVWALLPEENYNKSGYELEIMKLEAKDSDEETEDFDLGQSERNISRSPLTAKFGVEATSGLLKSDRELSSAQTESTSLKNSPKVDNSKESSFIQGNNNGADRDISFSNVDEPKATDKFLDVAIGATSCQIPETDVKIRESKKANSPKTGCQDVLITEKAEPHAETFNKLANDFGSPSTASAERVTHSEAKFSSIKYYSKNKRGFTLPRSLNDGLDNGAGSTVSPLADLKSGNKHKTPSNKVLNGSGGIKSTSAKDSGDVTIGKLPQKRVNEAASNTLKSRKITSDAKLFIEKITSENGKSEARKVTSVVEEPSKSEPCFSAGKDSFDKPNKNSFSKSIASISNSLSFDEPFTRDTSPKSARSDKAYQTESKINGKHEIAGHGMEQVAGNEVEQHKLAKNLEGSPDNKNPLNGESPNLDLGNEESTKLIKKSPRKKSVAKRSFGSKPKVGATAKQKTLVSSNRTIQQGEAVNFSSRIKEVPIDNGDKPQPMTDDNNKSEEQETVVKHADDANGRLETMDDETEAPDDKCELELGMKHDENKNKADETAEKSEDMHHVTECEAAVPEKETAELTEKEKAPSVDDSTMKREVKHQVKKRPLSIAKKVTVAKGLQKSKVALSENKISMERENVARMKSAKEVSHATDASNKSFAPRKAFGDSKEQKENRPIDEGEQDMPEAKSVANRTNKLSSKPEKINPKQTGYNPPMSEANKRLKTEPPCFILTGHHFLRKDFQQLIKKLKGKVCRDSHQWSYQATHFIAPEPLRRIEKFFAAAASGRWILKTDFLTASNQAGEFVEEEPYEWHDIGLNEDGTIDMEAPRKWRLLKERTGHGAFYGMRIIVYGDCITPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIVAPGMPRVDLWVQEFLRYEIPCISADYLVEYVCKPSSSLEKHVLYDTHAWAERSFSKHQNRAEETTDIEESISSTPESNDVACEVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLMDVPEEDWFCSKCIVKRNCSNSPKKRKKGGFSKSKRK* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 858 885 - -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 244 284 - -
Ahy19g1161 1218 Gene3D BRCT domain 891 1007 IPR036420 -
Ahy19g1161 1218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1128 1217 IPR013083 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 633 652 - -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 479 548 - -
Ahy19g1161 1218 ProSiteProfiles Zinc finger PHD-type profile. 1141 1197 IPR019787 -
Ahy19g1161 1218 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1194 IPR044254 -
Ahy19g1161 1218 SUPERFAMILY BRCT domain 908 985 IPR036420 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 833 856 - -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 669 700 - -
Ahy19g1161 1218 Pfam twin BRCT domain 111 175 IPR001357 -
Ahy19g1161 1218 Gene3D BRCT domain 1008 1111 IPR036420 -
Ahy19g1161 1218 SUPERFAMILY FYVE/PHD zinc finger 1130 1201 IPR011011 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 404 440 - -
Ahy19g1161 1218 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 561 775 - -
Ahy19g1161 1218 Gene3D BRCT domain 2 93 IPR036420 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 534 548 - -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 707 769 - -
Ahy19g1161 1218 CDD BRCT_TopBP1_rpt7 896 971 - -
Ahy19g1161 1218 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Ahy19g1161 1218 SMART BRCT_7 1009 1096 IPR001357 -
Ahy19g1161 1218 SMART BRCT_7 8 86 IPR001357 -
Ahy19g1161 1218 SMART BRCT_7 891 971 IPR001357 -
Ahy19g1161 1218 SMART BRCT_7 106 183 IPR001357 -
Ahy19g1161 1218 SMART PHD_3 1143 1195 IPR001965 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 415 437 - -
Ahy19g1161 1218 Pfam BRCA1 C Terminus (BRCT) domain 906 967 IPR001357 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 506 533 - -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 808 889 - -
Ahy19g1161 1218 ProSiteProfiles BRCT domain profile. 908 981 IPR001357 -
Ahy19g1161 1218 SUPERFAMILY BRCT domain 7 90 IPR036420 -
Ahy19g1161 1218 Pfam PHD-finger 1144 1196 IPR019787 -
Ahy19g1161 1218 Gene3D BRCT domain 99 223 IPR036420 -
Ahy19g1161 1218 MobiDBLite consensus disorder prediction 584 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1161 Ahy-Chr19 21580730 21590433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1161 129 235 Core DNA Replication Machinery Family AT4G02110 63.551 1.65e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy19g1161 BRCT 2.30E-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1161 K10728 - zju:107426340 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1161 19 21580730 21590433 Ahy19g1161 19 21580730 21590433 ECH
Ahy19g1161 19 21580730 21590433 Ahy9g0905 9 16437725 16447535 hybridization