Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1093 ATGGCGGCTTTAGAATCAAGTTTGAGAGTGTTAGTAGGAGTTCATCCTTCTTGGTGTCCCAACAACAGAAAAGCACCCCAAACCATATCTATAAGGCTCCTCCGCACACGTGTCTGCACCTCTGTTGCTTCTTCCACTCCCACTTCCACTGCCACTACCCCTACCCCTTTGCATTTCCAACATGAACTTCTCCAGCACACCACAAACCTCAAGAAGCTTTACGCCTCTAACTTGCCCTGGTCACTCTCCCCCGCCGACGTCAAGGCTCTCTTTTCTCAATGCGGAACGGTTACCGATGTTGAGATGATAAAGAACAAGGATGGTGGATTGACTGGCTTCGCCTTCATTACCATGTCTTCTGCCCAAGAGGCTCAGGCTGCTATTCATAAATTCCACTCTCTTCAAATATCAGGCCGGACAATTAAAGTAGAGCTTGCAAAGAGATTTAAGAAACCCCGTCCTCCAGGTCCTCCTGCCGGAGAGACGCGTCATAAAATTTATGCATCCAATCTTGCTTGGAAAGTAAGATCTGGCCATCTCAGAGAATTCGTCACTGAGAATTTTAGAGAACCAGTTTCAGCCAGAGTTGTGTTCGATAGTTCTTCTGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGTTACAAAGGAGGAAGCAGAGGATGCCATTTCTTCTTTGGATGGGAAGGAATTAATGGGGCGAGCGGTTCGCCTAAAATTTAGCCGAAAGACCATTGAAGAAGCTGATACTGATAGTGGCAAAGAAGAGCAGGGTTATCATGATCAATTGGAAGCACCATAA 801 0.4619 MAALESSLRVLVGVHPSWCPNNRKAPQTISIRLLRTRVCTSVASSTPTSTATTPTPLHFQHELLQHTTNLKKLYASNLPWSLSPADVKALFSQCGTVTDVEMIKNKDGGLTGFAFITMSSAQEAQAAIHKFHSLQISGRTIKVELAKRFKKPRPPGPPAGETRHKIYASNLAWKVRSGHLREFVTENFREPVSARVVFDSSSGRCAGYGFVSFVTKEEAEDAISSLDGKELMGRAVRLKFSRKTIEEADTDSGKEEQGYHDQLEAP* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1093 266 SMART rrm1_1 165 239 IPR000504 GO:0003723
Ahy19g1093 266 SMART rrm1_1 72 144 IPR000504 GO:0003723
Ahy19g1093 266 SUPERFAMILY RNA-binding domain, RBD 66 156 IPR035979 GO:0003676
Ahy19g1093 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 236 IPR000504 GO:0003723
Ahy19g1093 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Ahy19g1093 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Ahy19g1093 266 PANTHER OS02G0815200 PROTEIN 42 258 - -
Ahy19g1093 266 Gene3D - 162 264 IPR012677 -
Ahy19g1093 266 Gene3D - 59 161 IPR012677 -
Ahy19g1093 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Ahy19g1093 266 PANTHER CHLOROPLAST, PUTATIVE-RELATED 42 258 - -
Ahy19g1093 266 SUPERFAMILY RNA-binding domain, RBD 152 245 IPR035979 GO:0003676
Ahy19g1093 266 MobiDBLite consensus disorder prediction 243 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1093 Ahy-Chr19 18498367 18501275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1093 73 254 Eukaryotic Initiation Factors Gene Family AT4G34110 28.342 1.13e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1093 - - gmx:100793319 246.128