Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1092 ATGGGTTCTCTTGGAGATCCAAGAAGTTGGATTTCATATATGAACAGCAAAGATTGTTCATTAGAGTGGTGTCACAAACATAAATTGTATCCTCCACCGTCAACAGCACCACCTAATTCAAGGCCAAATTTTTCCCCTCTTATAATTGCCATGGCGGGGATCTTGGCCACGGCTTTTATTCTTGCAAGTTACTACTATAGCCGCCGCAGAGAGAACCCCAACGATGACGATGACGACTCAGTCCATGAAGCCGAAACCTGGTGGCATCAATACTACGTCTCAACAACCACCACAACCAGAATTGGCGGCGACTTAGATGAGGATGCGTTAAAGTGGATGGCAGTGTGGAAGTACAAGAGTGGCAAAAGCAGAGCCGATAGCTGTTGTGTTTGTTTGAATGAATTTGATGAGGGAGACAGTGTTAGGGCTTTGCCGAACTGCACCCATGCTTTTCATCCTCTTTGCATTGAGACATGGCTCAAATCTCACTCCAGCTGCCCTCTTTGTCGTCGTGCCACTGCCCCCGTAGCTCCGCCGTACGCGGTGGTGGAGGACCTCCCTCTCCCTGCAGGAACTGACACTACTACCGAAGAAGAAGAAGAAGAAAGCATACATAATAACGGTAACGTTGATAACAACAGCCTGCACAGAATAATTGATATAATAAGAGATGATCAACTTCAAGTAGGGGGTCATGATGATGATCAGTCCATTAATAAAACTATCAGGAAGTCAGTTTCTATGGACCCCCACTCATTCTCCTCGTCGTCTTCGTCATCAAAGAGCAGATACAGATCTCGTGGAGATCAAAGAAGCAGTAAGTCCTGCAGCTGTAAGAGAAAACATCTCTTGCATTCTGTATTCAGGGGCCCAATTGCTATGAAAAGGTCATTTTCCGGTAGTGCAAGATTCTCCCTTATTACCACAGCTAGTCACACAGCAAGGCACTAA 951 0.4595 MGSLGDPRSWISYMNSKDCSLEWCHKHKLYPPPSTAPPNSRPNFSPLIIAMAGILATAFILASYYYSRRRENPNDDDDDSVHEAETWWHQYYVSTTTTTRIGGDLDEDALKWMAVWKYKSGKSRADSCCVCLNEFDEGDSVRALPNCTHAFHPLCIETWLKSHSSCPLCRRATAPVAPPYAVVEDLPLPAGTDTTTEEEEEESIHNNGNVDNNSLHRIIDIIRDDQLQVGGHDDDQSINKTIRKSVSMDPHSFSSSSSSSKSRYRSRGDQRSSKSCSCKRKHLLHSVFRGPIAMKRSFSGSARFSLITTASHTARH* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1092 316 MobiDBLite consensus disorder prediction 188 211 - -
Ahy19g1092 316 SMART ring_2 128 169 IPR001841 -
Ahy19g1092 316 Pfam Ring finger domain 126 170 IPR001841 -
Ahy19g1092 316 MobiDBLite consensus disorder prediction 242 277 - -
Ahy19g1092 316 CDD RING-H2_PA-TM-RING 128 170 - -
Ahy19g1092 316 SUPERFAMILY RING/U-box 127 176 - -
Ahy19g1092 316 MobiDBLite consensus disorder prediction 242 263 - -
Ahy19g1092 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 175 IPR013083 -
Ahy19g1092 316 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 4 307 - -
Ahy19g1092 316 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Ahy19g1092 316 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 307 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1092 Ahy-Chr19 18465175 18466249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1092 1 170 C3H Transcription Factor Family AT3G03550 38.916 3.30e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1092 - - aip:107616926 583.563