Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1026 ATGGGCAGACGTCCTTGCTGCTCGAAAGAGATGAACAAAGGTGCTTGGTCAAGAGATGAAGATCAAACCCTCTCCAAATATGTTGCCATTCATGGTGAAGGAAAATGGCAAAAGGTTGCCCAAAATGCCGGCTTGAATAGGTGTGGAAAAAGTTGCAGACAGAGATGGTTGAATTATCTGAAGCCAGGCATTAAGAGAGGCGACATCTCTCAGGATGAAGAGGATATGATCATAAGGCTACATCGTCTTCTCGGTAACAGATGGGCCTTGATAGCGAAGAGATTACCGGGACGAACAGACAATGAAATCAAGAACTACTGGAATACCAATCTCTCAAAGAAGCTTCAACAACAACAACAACAATGGCAGCCACCTCCTCCTTCTTCATCTTCTTCCCATAAACACAAAAACAATCTTACTCACAAACATGTACTAGTAGCACCCCAAACTCCAATTCCTAGAAGACTCAAAGCTTTTCACTACAACAACAACGATAATAATAATAATAACACTTCAATTAGTCCCTGCAGTGATGATAATAATGAAGAAGCTTCTCTCACTGATTTTCTCATTGACATTGATGATAATGATGATGATCAAATGCTGTTAGTTACTGATAATGACGACGATCACCGCCATAACTCGAAGCTGCTCGAAGAACAGAGCAATCCAAGCTCATCATCACTATTATCATCGTCAGATCAATGTAACAACTTGTTTATGTCTGAGAAATTTGACCCTTTGGAGACACTTTTGGATGTGGAGCTAAAAAGGGTGGCTTCATTTCTTGGACTCAAAAATTGA 804 0.4055 MGRRPCCSKEMNKGAWSRDEDQTLSKYVAIHGEGKWQKVAQNAGLNRCGKSCRQRWLNYLKPGIKRGDISQDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQQQQQQWQPPPPSSSSSHKHKNNLTHKHVLVAPQTPIPRRLKAFHYNNNDNNNNNTSISPCSDDNNEEASLTDFLIDIDDNDDDQMLLVTDNDDDHRHNSKLLEEQSNPSSSSLLSSSDQCNNLFMSEKFDPLETLLDVELKRVASFLGLKN* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1026 267 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ahy19g1026 267 Gene3D - 68 143 - -
Ahy19g1026 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Ahy19g1026 267 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 263 - -
Ahy19g1026 267 PANTHER MYB TRANSCRIPTION FACTOR 1 263 - -
Ahy19g1026 267 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ahy19g1026 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ahy19g1026 267 SMART sant 65 113 IPR001005 -
Ahy19g1026 267 SMART sant 12 62 IPR001005 -
Ahy19g1026 267 MobiDBLite consensus disorder prediction 159 180 - -
Ahy19g1026 267 CDD SANT 15 60 IPR001005 -
Ahy19g1026 267 MobiDBLite consensus disorder prediction 113 136 - -
Ahy19g1026 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Ahy19g1026 267 MobiDBLite consensus disorder prediction 160 180 - -
Ahy19g1026 267 Gene3D - 6 66 - -
Ahy19g1026 267 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Ahy19g1026 267 CDD SANT 70 111 IPR001005 -
Ahy19g1026 267 MobiDBLite consensus disorder prediction 113 134 - -
Ahy19g1026 267 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1026 Ahy-Chr19 16645736 16649191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1026 1 115 MYB Transcription Factor Family AT2G16720 63.793 4.04e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g1026 Myb_DNA-binding 4.00E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1026 K09422 - gmx:100101858 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1026 19 16645736 16649191 Ahy9g0785 9 12625304 12628598 hybridization