Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1001 ATGAACATGGAACCAAACCCAACACAAGATGCTCTTGACTGGCAGCTAGAAGGTTCTGCCTCTTTCTTCCCACCATTCTTGGATTATCCATATCCCATTCAAGATTATCAGTTCTGGGATCAAAACCAAGACATAATCTGCTACCATAACCAAATTGATGCCGGCACCGGATCCCCGAATGCCGCAAACGGCACTGCCGCCGTGGTGGCCACCACTGCCACCAGTACAACCTGCACAACACCCTCGGATCCTGAACCTTACAGTTACAACAACCTACCAGTTTCAGACTTGCCGACGAAGAAACGAAACTCCAGCGACAATGATTGCTCGGTCCAAAAGCCTTCACAGAGCCACAGAGCCAAGAAATTCAAGGCTCGTTCAACTAATGAAGTTGACAATGGCGATTCAGTTGCCGAAGGGACTAGTGTTAGAAAATCTGGTGGGAACAAAAAAGGTGGAGGCAAGAACAATGGCAATAACTGCAACAATGGAAACAAGGAAGGTAGGTGGGCGGAACAGTTGCTCATCCCTTGTGCTTTAGCTATAAATGCTAAAAATTTGAATCGTGTACAGCACCTCTTGTATGTGCTCCATGAGCTAGCCTCGCCTACAGGCGATGCGAATCACCGACTCGCGGCACACGGACTCAGCGCACTGACACACCATCTATCCTCATCGTATTCGTCTTCTTCATCTTCTTCTACCATAACAAACGATTCAGGGACTAAGACTTTTGCATCAGTGGACTCCAGATTCTTCCATAAGACACTCCTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCTAACAACATTGCAAACGCTTCAATCCTTCAATTCCTTTCCGAAGAAGAATCAAGTAGTTCGCGTACTCTTCACATCCTTGACATTGGAGTCTCCCATGGTGTCCAATGGCCTACTTTTCTTGAGGCGTTAACCCGAAGACCCGGCGGACCTCCTCCTCTGGTTCGCCTAACCGTTGTAACCGCTTCCTCCAATGAAAATGAACAGAACATGGAAACTCCTTTCTCTGTAGGTCCACCCGGTGATAACTTCTCTTCTTACCTCCTTGGTTATGCTCAAACCATTAAGCTCAATTTGCAGATAAACAGGATTGATAATCTTGAATTACAGACACTGAATTCGAAGAGTATCGACACATCTTCGGATGAAACATTTATTGTCTGTGCGCAGTTTAGGCTCCACCACTTGAATCACAGAAATCCTGACGAGAGAAGCGAGTTTCTGAAGGCTTTGAGAAGCATGGAGCCTAAAGGAGTGATACTAAGTGATAACAACATTGAATGCAGTTGCAATGGCTGTGGAAACTTCGCGGCCGGATTCTCCCGGAGAGTGGAGTACCTGTGGAGTTTCTTGGATTCCACGAGTGTTGCATTCAAGGGCCGGGAGAGTGACGAAAGGAGAGTGATGGAAGGCGAGGCGGCGAAGGCCCTGACCAACCAGAGGAGATGA 1476 0.4722 MNMEPNPTQDALDWQLEGSASFFPPFLDYPYPIQDYQFWDQNQDIICYHNQIDAGTGSPNAANGTAAVVATTATSTTCTTPSDPEPYSYNNLPVSDLPTKKRNSSDNDCSVQKPSQSHRAKKFKARSTNEVDNGDSVAEGTSVRKSGGNKKGGGKNNGNNCNNGNKEGRWAEQLLIPCALAINAKNLNRVQHLLYVLHELASPTGDANHRLAAHGLSALTHHLSSSYSSSSSSSTITNDSGTKTFASVDSRFFHKTLLKFYEVSPWFSFPNNIANASILQFLSEEESSSSRTLHILDIGVSHGVQWPTFLEALTRRPGGPPPLVRLTVVTASSNENEQNMETPFSVGPPGDNFSSYLLGYAQTIKLNLQINRIDNLELQTLNSKSIDTSSDETFIVCAQFRLHHLNHRNPDERSEFLKALRSMEPKGVILSDNNIECSCNGCGNFAAGFSRRVEYLWSFLDSTSVAFKGRESDERRVMEGEAAKALTNQRR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1001 491 MobiDBLite consensus disorder prediction 76 100 - -
Ahy19g1001 491 MobiDBLite consensus disorder prediction 76 161 - -
Ahy19g1001 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 489 IPR005202 -
Ahy19g1001 491 Pfam GRAS domain family 172 481 IPR005202 -
Ahy19g1001 491 ProSiteProfiles GRAS family profile. 162 491 IPR005202 -
Ahy19g1001 491 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 489 IPR030015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1001 Ahy-Chr19 16008832 16011199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1001 5 488 GRAS Transcription Factor Family AT3G13840 47.047 1.43e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ahy19g1001 GRAS 1.80E-58 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1001 - - aip:107615113 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1001 19 16008832 16011199 Ahy19g1001 19 16008832 16011199 ECH
Ahy19g1001 19 16008832 16011199 Ahy9g0768 9 12170053 12172517 hybridization
Ahy19g1001 19 16008832 16011199 Ahy18g0294 18 2425410 2427375 PCT
Ahy19g1001 19 16008832 16011199 Ahy8g1090 8 25942662 25944551 PCT