Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0996 ATGTCCTCGCATGATCAAGTCCTAGCGTCTCTCCTCTCCCAGATTGTTCTTTCCTTCGACGGCGCCGTTTTGGGCCTCGCCTTGGCCTACGCCGCCATCCGCTCCATCCGCAATTTCACCACCAACTCCGCCTCCCTCCGCAAGCTCCGTCGCGCTCCCTCCGTCTCCGTCTCCGACCTCCGCTCGCTCCTCTCGGACTCCGATGGAAATTCTGACGATGGCGGAATTGTAGTTGTACGTGGCACCGTTGAGCCCAAGGCCGCCGTCGACGGCAGCTGGAAAAGCTTGAGGCCAAGCCTCTTGGTCTCTCGTGAGTCCGGCGACAAAGCCGTCGTCCTTCAAATAACTCAAACGTGTATATACAATGAGTGGAAGGGCTTATTTGGATGGACTTCAGATCTTCGAGCTATTTTTGCAAGGTCTTGGAGACAACCAGAGTCCAAATTCCTAAGAAAGGTGCCTTTTGTTCTGGTTGATGTTGGACGGCAGCCAAGTACTGAATATGTTGTTGTCAACTTAGATGGATCAAGACATCCCTTACCTCTGACAACAGTTTATCATAAATTACAACCCATAAATGCTTCTCCTTATACATTCCTGCAAGCGCTTTTTGGGCATGAGTATCCAGTTGGACTACTAGAGGAAGAGAAAATTCTTCCTGTGGGGAAGGATATCACAGCGGTTGGCCTTTGCAGTGTAAGAAATGGAATTCCCGAAATTAAGTCATGTAAAGACCTACCATATTTTTTGTCGGAGTTGAGCAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACGAAAGTACTGTTTTGGGGTGGAATTGTTCTTGGTTCAGTATCAATTGGGATTCTTGGCTATTCAGTCGCTAGAAACTGGAATAAGTGGATGCAATGGAAAGAACAGCGGCAGCGCCAGCAACAAAGGCAAGCGGTTATTGATGAAGTTGATCCTCAAGTGGATGAGCAGAATGAAGATATTGCAGATGGACAGTTGTGTGTCATATGCCTGATGAGGAGAAGGCGCTCTGTTTTCGTCCCCTGTGGGCACCTTGTGTGTTGCCAAGGATGTGCCATATCGGTGGAACGCGAAGTGGCACCCAAGTGTCCTGTTTGTCGACAGGAGATCCGGCAGTCGGTTCGGATTTTTGAATCCTGA 1155 0.4883 MSSHDQVLASLLSQIVLSFDGAVLGLALAYAAIRSIRNFTTNSASLRKLRRAPSVSVSDLRSLLSDSDGNSDDGGIVVVRGTVEPKAAVDGSWKSLRPSLLVSRESGDKAVVLQITQTCIYNEWKGLFGWTSDLRAIFARSWRQPESKFLRKVPFVLVDVGRQPSTEYVVVNLDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLEEEKILPVGKDITAVGLCSVRNGIPEIKSCKDLPYFLSELSKDQMIVDLSFKTKVLFWGGIVLGSVSIGILGYSVARNWNKWMQWKEQRQRQQQRQAVIDEVDPQVDEQNEDIADGQLCVICLMRRRRSVFVPCGHLVCCQGCAISVEREVAPKCPVCRQEIRQSVRIFES* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0996 384 Pfam Zinc finger, C3HC4 type (RING finger) 330 377 - -
Ahy19g0996 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 384 IPR044247 GO:0004842
Ahy19g0996 384 Pfam E3 Ubiquitin ligase 139 284 IPR022170 GO:0004842|GO:0006996|GO:0016567
Ahy19g0996 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 384 IPR013083 -
Ahy19g0996 384 ProSiteProfiles Zinc finger RING-type profile. 332 372 IPR001841 -
Ahy19g0996 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 384 - -
Ahy19g0996 384 SMART ring_2 332 371 IPR001841 -
Ahy19g0996 384 SUPERFAMILY RING/U-box 320 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0996 Ahy-Chr19 15971936 15977227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0996 324 381 C3H Transcription Factor Family AT3G06140 36.207 1.49e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0996 K15688 - gmx:100800058 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0996 19 15971936 15977227 Ahy19g0996 19 15971936 15977227 ECH
Ahy19g0996 19 15971936 15977227 Ahy9g0762 9 12087771 12093030 hybridization