Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy19g0958 | ATGGCTGTTCCAAAAGTGAATGAAATGTTGCTTCTAGACCTTGAAGAAATGGGATTTCCACGGTCACGAGCCACCCGGGCACTTTATTATTCAGGCAACAAGAACTTAGAGGATGCAATACATTGGACAATTGATCACGAAAATGACCCTGATATTGATGTGTTGCCACTGGTAGATGTAGACATTGATATTGATTCTCCTCAATCCTTTCCTATCACGGAAGAAATCAGAATCAAAGCTCAGAAGTTAAGGGAACAAGAGCATAAGAAAAAAGAGGAGGAACTAAAAAGATTGGAGAGAGAACGGGAGAAGGAGAGGATTCAAGCAGGTAAGAGACTCCTTGAGGCAAAGCGAATTGCTGAAGAAAATGCAAGACAAAGGAATTTAGCCTTGAGAAAAGCAGAAAAGGAAGAAGAGAAAAAGGCAAGGGAAAATGTTCTCCAAAAACTACAACAGGACAAGATAAATAGAAGATCTAAGCATGAATCAATATTGCCTATAGATAGCCTAGCCAATGTCAGATCATCTGCTACTACTTTCGAACAGCAAGATAAGATATTGCAGAATCCAAAACCTGTTTCCACAATTGAAAAGGTTGATTACTTAAGGGAATGTTTGAGGTCTCTCAAGCGTAAACACCAGGCCGAGCATGGGAGAGTCAGAAAGGCCTTCGAAACACTTTCAATTTATGTTCGAAATGTTGTCAAGAATCCAAACGAGGAAAAGTACAGGAAGATCAGACTAAGCAATCCATTATTCCAAGAAAGAGTTGCAAGTTTGAATGGAGGTGTGGAGTTTCTTGAACTCTGTGGTTTTGAAAGAACAGGTGACTTCTTGTATCTACCTCATGAAAAGGCTGATATAGCATTACTAAATTCAGCTGGTGCTGTGTTGCATTCTGCAATCACAAATCCTTTCTTTGGACTTCTAAGTACTTAG | 939 | 0.3962 | MAVPKVNEMLLLDLEEMGFPRSRATRALYYSGNKNLEDAIHWTIDHENDPDIDVLPLVDVDIDIDSPQSFPITEEIRIKAQKLREQEHKKKEEELKRLEREREKERIQAGKRLLEAKRIAEENARQRNLALRKAEKEEEKKARENVLQKLQQDKINRRSKHESILPIDSLANVRSSATTFEQQDKILQNPKPVSTIEKVDYLRECLRSLKRKHQAEHGRVRKAFETLSIYVRNVVKNPNEEKYRKIRLSNPLFQERVASLNGGVEFLELCGFERTGDFLYLPHEKADIALLNSAGAVLHSAITNPFFGLLST* | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy19g0958 | 312 | SUPERFAMILY | UBA-like | 6 | 54 | IPR009060 | GO:0005515 | |
| Ahy19g0958 | 312 | SMART | PGNneu | 222 | 283 | - | - | |
| Ahy19g0958 | 312 | Coils | Coil | 73 | 108 | - | - | |
| Ahy19g0958 | 312 | CDD | UBA_PUB_plant | 6 | 53 | - | - | |
| Ahy19g0958 | 312 | Pfam | UBA/TS-N domain | 13 | 42 | IPR015940 | - | |
| Ahy19g0958 | 312 | Gene3D | - | 8 | 52 | - | - | |
| Ahy19g0958 | 312 | Coils | Coil | 117 | 153 | - | - | |
| Ahy19g0958 | 312 | SUPERFAMILY | PUG domain-like | 203 | 306 | IPR036339 | - | |
| Ahy19g0958 | 312 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Ahy19g0958 | 312 | Gene3D | - | 203 | 300 | - | - | |
| Ahy19g0958 | 312 | PANTHER | F13M7.16 PROTEIN | 1 | 312 | - | - | |
| Ahy19g0958 | 312 | Pfam | PUB domain | 220 | 286 | IPR018997 | - | |
| Ahy19g0958 | 312 | PANTHER | PUB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 312 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy19g0958 | Ahy-Chr19 | 14984130 | 14990935 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy19g0958 | 1 | 310 | C2H2 Transcription Factor Family | AT1G04850 | 53.674 | 3.49e-86 | 260 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy19g0958 | - | K24348 | gmx:100781260 | 387.497 |