Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0879 ATGCTTCGGTTGTTTTCATCTGGGTCTTATCTGTTTGAGTCATTTTCAAATCCCCCATTTATAAAAGCATTGCAAGTTTTTACGCATGCCACCTATTCGACCATTTGCCTAGCCCAACCTAAAGCTGAAAAGGAGGATCCTGCAGAGAAACCAATTAATGCTACTGAGGTTTTAAGTAAATGGGGTTGTAGTGATGGTGAATTGATGAGAATATTCACCCGTTGCCCAGCTTTGCGCAATGCTGATGCTACCAAAATCCAATCAAAACTTGATCTTCTGAGTGCTTTTGGAATAGGGGCATCTGATGTTGTTAAGATAGTCAATTGCAGGCCCCGGTTTTTCCAGTCTCGGATTAACCAATCTTTCAACGAGAGGCTTGCCTATTTCTTGTCATTGTTTGAGACGAAGGATTTGCTTACCAAAGCCATTGTGAGAAACCCTTCACTTTTGGTCTATGATGGTAGAGTTGACATTGAAGCTACCTTTGCACTCTATGAGGAGTTGGGTATTAAGAAAAGGGACTTGATTCAGATGATACTATTGCGTCCCACGATCATTTCAAGGACATCGTTCAACGATGATAAGATGGAATACATACGCAGGATAGGGCTTTCCAAGGATTCAAAGATGTATAAGTATGTGGTAACACTAATAGGTGTGTCACGTGTCGAAACAATTCGTGATAAGGTTGCGAATTTGGAGAAATTCGGTTTGTCTGAGGATGAGGTCTTTTGGCTTCTTGGGAAGTCCCCTCATATTTTGACATTGTCAACTGACAAGGTTCAGAGGAACATGACTTTCATTCTGGCCACAATGAAGCTCGATGTCAAGGCAATCTTAAGATGCCCATTGCTATTGTGTTTTAATATTGATACGGTTTTGAAGCCAAGAGTGCTTCTAGCAATGAAGGTACATGAGATTGATGGTGAGCAGAAAATCAGGAGACCTCCGATTCTTAGGGCACTCAGGATGACAGAAGAGAAGTTTGTGAATTTGTTTATCAAATGCCATGAGGAGGAAGTTGCCAATGAGTTAATGGAATTCTATAGAAGAACAAAAAATGTTAAGAGATTAGCTGAGTCATCAAAGAAGAGCGTTCGAAAAGGATTTCCTTTCTGA 1119 0.4066 MLRLFSSGSYLFESFSNPPFIKALQVFTHATYSTICLAQPKAEKEDPAEKPINATEVLSKWGCSDGELMRIFTRCPALRNADATKIQSKLDLLSAFGIGASDVVKIVNCRPRFFQSRINQSFNERLAYFLSLFETKDLLTKAIVRNPSLLVYDGRVDIEATFALYEELGIKKRDLIQMILLRPTIISRTSFNDDKMEYIRRIGLSKDSKMYKYVVTLIGVSRVETIRDKVANLEKFGLSEDEVFWLLGKSPHILTLSTDKVQRNMTFILATMKLDVKAILRCPLLLCFNIDTVLKPRVLLAMKVHEIDGEQKIRRPPILRALRMTEEKFVNLFIKCHEEEVANELMEFYRRTKNVKRLAESSKKSVRKGFPF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0879 372 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 SMART mt_12 176 205 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 21 372 - -
Ahy19g0879 372 Gene3D Transcription termination factor 3, mitochondrial 113 343 IPR038538 -
Ahy19g0879 372 PANTHER CGI-12 PROTEIN-RELATED 21 372 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 Pfam mTERF 135 329 IPR003690 GO:0003690|GO:0006355
Ahy19g0879 372 Pfam mTERF 56 149 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0879 Ahy-Chr19 13377226 13378885 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy19g0879 mTERF 2.80E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0879 K15032 - gmx:100799629 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0879 19 13377226 13378885 Ahy9g0642 9 9617409 9620655 hybridization