Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Ahy19g0878
ATGGGGCCAAGTGGTGGTGCCTTGTCAGCGGCGGCGAAGCAAGCGGAGCAACTCAGAATAGATGGCAACGCTTACTTCAAGAAAGACCGTTTCGGTGCCGCCATCGATGCCTACACAGAGGCAATTACTTTGTGCCCTAATGTTCCTGTGTATTGGACGAACCGTGCTCTCTGCCATCTTAAGCGCCATCATTGGGAGAGAGTGGAAGAAGATTGTCGGAGAGCGATTCAGCTTGACAACCATTCGGTTAAGGCTCACTATATGTTGGGACTTGCATTGCTACAGAAACAAGAACATACCAAGGGTATCAGAGAATTAGAGAAGGCTTTGGATCTTGGGAGAGGCGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGAGAGAGCTTGCGAGAGCAAAATACCAAGAGTGGGAACGGACATCTTCCAAGCGATCGTGGGATTTGCAGAGCTTGAAGGAAGCTTGCGAGTCCGCTCTAAAGGAAAAACACTCTCTTGATATGTCCCACATGGAAGGATTTTTAGATGATGCTACCACTTCTCAATTGGAACAGTTAGAGGCTTTACAAAGAGTCTTCAGTAAAGCTGCAGAGGGTGACACACCTACTGAGGTGCCAGATTACTTATGCTGCAGAATCACACTTGATATTTTTCATGATCCCGTAATCACTCCGAGCGGAATTACATATGAGAGGGCAGTGATTCTTGATCATTTGCAGAAGGTTGGTAGATTTGACCCTGTGACGCGAGAACCACTGGATCCGTCGCAACTAGTACCGAACTTGGCCATTAAGGAAGCAGTGCAGGCATACTTGGACACACATGGGTGGGCCTACAAGGTTTAA
846
0.4764
MGPSGGALSAAAKQAEQLRIDGNAYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRHHWERVEEDCRRAIQLDNHSVKAHYMLGLALLQKQEHTKGIRELEKALDLGRGANPKGYMVEEIWRELARAKYQEWERTSSKRSWDLQSLKEACESALKEKHSLDMSHMEGFLDDATTSQLEQLEALQRVFSKAAEGDTPTEVPDYLCCRITLDIFHDPVITPSGITYERAVILDHLQKVGRFDPVTREPLDPSQLVPNLAIKEAVQAYLDTHGWAYKV*
282
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Ahy19g0878
281
SUPERFAMILY
RING/U-box
197
279
-
-
Ahy19g0878
281
ProSiteProfiles
TPR repeat profile.
15
48
IPR019734
GO:0005515
Ahy19g0878
281
Pfam
Tetratricopeptide repeat
84
112
IPR019734
GO:0005515
Ahy19g0878
281
Pfam
Tetratricopeptide repeat
22
47
IPR019734
GO:0005515
Ahy19g0878
281
Gene3D
Tetratricopeptide repeat domain
9
145
IPR011990
GO:0005515
Ahy19g0878
281
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
203
281
IPR013083
-
Ahy19g0878
281
SUPERFAMILY
TPR-like
8
135
IPR011990
GO:0005515
Ahy19g0878
281
Pfam
U-box domain
205
277
IPR003613
GO:0004842|GO:0016567
Ahy19g0878
281
PANTHER
E3 UBIQUITIN-PROTEIN LIGASE CHIP
9
280
IPR045200
GO:0000209|GO:0061630
Ahy19g0878
281
SMART
Ubox_2
208
271
IPR003613
GO:0004842|GO:0016567
Showing 1 to 10 of 16 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Ahy19g0878
Ahy-Chr19
13368232
13372204
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Ahy19g0878
11
281
U-box Gene Family
AT3G07370
69.373
3.77e-145
407
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Ahy19g0878
K09561
-
gmx:100796519
495.738
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Ahy19g0878
19
13368232
13372204
Ahy9g0641
9
9610981
9614604
hybridization
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows