Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0667 ATGGGTAATCAGAAGCAAAAGTGGACGCAAGATGAAGAAGACGCACTCATCGCTGGCGTGGAAAAACACGGTCCAGGAAAGTGGAAGAACATTCTCAAAGACCCTCAATTCGCACCATTTCTCACTTCACGTTCCAATATCGACCTCAAGGATAAATGGCGGAATTTGAGTGTTAGCAATGGCACTCAAGGGTCCAAGGAAAAATCTAGGGTTCCTAGAATCAAGGCTGCTGCCCCAGTTGCTGCTGCCCCAGTTGCTGCTGCTGCTGCTAGTAATGCTATTGTTGTTGCCGGGGAAGATGCTACTATTGTCACCACTATGATTCATCAACCTGATCCTTCTGTTGCTGTGGGTGATTCTTCTCAAAATGACGAAGATGCCAAGAATCGTCCGAGGTACAATGCAATGGTTTTAGAAGCGCTGTCAGCTTTGAAAGATGCTAATGGATCTGACCTGAATGCCATTGTTAACTTCATTGAGCTAAAACACAAGGTTCCTCAGAATTTCAGAAGGGCATTGAGCACCAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAACTGTTACAAGATTAAAAAGGACTATTCACCTGTGCCAAAATCACCAGTTGCTGTGAAAAAGAATGTGTGGCCACAACGGCAACAACCACCACCACCCCCGGAGTTTGTGGCATCTAATGAGACAATAAAGGAAGCTGCTGAAACTGCAGCCTACAGAATTGCCGAGGCCGAAAGCAAGTCATATTTAGCCGCTGAAGCAGTCAAGGAGGCAGAACGAATTGCACGCTTAGCTGAAGATGCTGAGGCGATGTTACAGCTAGTACAACAGATTTATGATGCTTGTTCGCGCGGTGAAGCTGTCATCTTGGCATCTTAA 888 0.4595 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPRIKAAAPVAAAPVAAAAASNAIVVAGEDATIVTTMIHQPDPSVAVGDSSQNDEDAKNRPRYNAMVLEALSALKDANGSDLNAIVNFIELKHKVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDYSPVPKSPVAVKKNVWPQRQQPPPPPEFVASNETIKEAAETAAYRIAEAESKSYLAAEAVKEAERIARLAEDAEAMLQLVQQIYDACSRGEAVILAS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0667 295 Coils Coil 254 274 - -
Ahy19g0667 295 SMART h15plus2 127 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy19g0667 295 Pfam linker histone H1 and H5 family 131 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy19g0667 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 129 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy19g0667 295 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 294 - -
Ahy19g0667 295 Gene3D - 125 207 IPR036388 -
Ahy19g0667 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Ahy19g0667 295 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Ahy19g0667 295 Gene3D - 8 83 - -
Ahy19g0667 295 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Ahy19g0667 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Ahy19g0667 295 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Ahy19g0667 295 SUPERFAMILY "Winged helix" DNA-binding domain 128 206 IPR036390 -
Ahy19g0667 295 SMART sant 4 59 IPR001005 -
Ahy19g0667 295 CDD H15 130 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy19g0667 295 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0667 Ahy-Chr19 9244120 9252022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0667 1 294 Single Myb Histone (SMH) Gene Family AT1G72740 44.482 1.41e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ahy19g0667 Linker_histone 2.70E-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0667 K09422 - gmx:778177 361.303