Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0643 ATGGATATACAATATGATTTGTTAGAGATGATTGCACCGCCAAAAGAGAGCTGGAAGATTCATGTCAGAGTAATCAGACTCTGGTCTTTACCAAAATTCAAAGACCCCAAGTCCAGTAGCTCTATTGAAATGGTGTTGATGAATGAGCAGGGAACAACTATGCATGCTTCTGTAGGTGAGGATTTGATATCTGTGTTCGAGTCATCGATATCGGAAGGAACTGTGTATGTTTTTACATACTTTGGAGTTAACAACAACTGTGGGTTGTATCGCACAACATCGCATCAATTTCGGTTGTTTTTTCAAGATAGAACTACTGTCTTACCCTCTTTCTGTGATGCAATACCGTTACATGGTATTAAGTTGGTCCCTTTTAGGGAAATTATGGGATACTCTCCTCATCATCCTTTTTTGGTTGACGTTGCTGGAGTTATGGCCGGCGTGGAGGGTGAGAGAAAATACATGAACGATGACAAACTTATTAACATGATGGTCATTCATATTGAGAATGACGGTTTACGGCTTAATATTATTGTTCTTGGAGAGATGGTGGACCGGATCAAGAATTTTCTAGCATCGGGCGATCAACAACTGCCAATAGTTATTTTTCAATTTGCAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCAGATATTCCTGAGGCTTTGATGCTTCGAAAAAGAGAGATCTCGCAGTACATGTCTGTGGTTTCTGGCAAACCAGCATATCTTGATGAAGATGAAGTTTTATATTCCATTGGGAGGAAAACAATAAAGGAGTTACGTGCTGCTGCGGATGTTGGATTCTATATTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTGTTTGCAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGATGGCTATAATAGGGACGTGAATAATGTGGTTGACAGGTATAAGTTGAATTTGTTGGTTTTTGATGGTACTGGTACAACGAACTTTGTTGTGTTCGATAAGGAGGTCGCAGCACTATTCGGACGAATCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGAAAGCAAGCAAAGATCCTACTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTCTATTCAAGGTCGAAGTAGAAACTACTGGATGGTGCGATACTTATGATGTATCGGTGATACGTTCTGATTCTACCAATTTACCGAGGTGGAGGGACACTCAAGGCCCGGTAAAATCTGGTGTACCCCGTGCTGGTCCTATTAACCCTATGCATCCTCGAGGTGAAGATGGATGTTTTGTTTGTGATGAGTCACCTGATCCAATTGTAAAAAATTTGTCTGTTATTAAAAGACCTGTTGTGAGGCGTCTGTTGGATGAGTTCAACATGTCTGGTGCTCCTTCCATTAAAAAGTAG 1467 0.4056 MDIQYDLLEMIAPPKESWKIHVRVIRLWSLPKFKDPKSSSSIEMVLMNEQGTTMHASVGEDLISVFESSISEGTVYVFTYFGVNNNCGLYRTTSHQFRLFFQDRTTVLPSFCDAIPLHGIKLVPFREIMGYSPHHPFLVDVAGVMAGVEGERKYMNDDKLINMMVIHIENDGLRLNIIVLGEMVDRIKNFLASGDQQLPIVIFQFARVKNAGGTNIVQNIMYGTRLLINPDIPEALMLRKREISQYMSVVSGKPAYLDEDEVLYSIGRKTIKELRAAADVGFYIVRATVLDVEPVPSWWYKSCVCSVKAEANADEYFCDGYNRDVNNVVDRYKLNLLVFDGTGTTNFVVFDKEVAALFGRICTEMVKELNEKGKASKDPTGFNEFFLDKEFLFKVEVETTGWCDTYDVSVIRSDSTNLPRWRDTQGPVKSGVPRAGPINPMHPRGEDGCFVCDESPDPIVKNLSVIKRPVVRRLLDEFNMSGAPSIKK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0643 488 SUPERFAMILY Nucleic acid-binding proteins 121 241 IPR012340 -
Ahy19g0643 488 Pfam Domain of unknown function DUF223 43 128 IPR003871 -
Ahy19g0643 488 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 357 - -
Ahy19g0643 488 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Ahy19g0643 488 Gene3D - 114 248 IPR012340 -
Ahy19g0643 488 CDD RPA1_DBD_A_like 19 107 - -
Ahy19g0643 488 Pfam Replication factor-A C terminal domain 282 404 IPR013955 -
Ahy19g0643 488 Gene3D - 260 419 IPR012340 -
Ahy19g0643 488 SUPERFAMILY Nucleic acid-binding proteins 267 406 IPR012340 -
Ahy19g0643 488 CDD RPA1_DBD_C 269 412 IPR013955 -
Ahy19g0643 488 MobiDBLite consensus disorder prediction 421 440 - -
Ahy19g0643 488 PANTHER REPLICATION FACTOR A 1, RFA1 20 357 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy19g0643 488 Gene3D - 6 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0643 Ahy-Chr19 8840313 8846873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0643 11 384 Core DNA Replication Machinery Family AT5G61000 21.628 1.64e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0643 - - ahf:112729129 956.436