Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0554 ATGGTTTATGTTAAGGCTCAGAAAGGTAAGGCCTACTTCAAAAGGTATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAGACTGACTACCGGGCCAGGATTCGGTTGATTAACCAAGATAAGAACAAGTACAACACACCTAAATACCGTTTTGTTGTGCGATTTACAAACAAGGATATCGTTGCACAAATAACATCTGCTAGCATTGCCGGTGATATTGTTCTTGCTGCAGCTTATTCCCATGAGCTGCCTCGCTATGGCCTTGAAGTCGGTCTTACTAACTATGCTGCAGCTTATTGCACTGGACTTCTTCTGGCCCGCCGAGTCCTTAAAATGCTTGAGATGGATGAGGAGTATCAAGGGAATGTAGAGGCTAGTGGTGAGGATTTTTCTGTTGAACCTGCTGACACAAGGAGGCCATTCCGTGCTCTCCTCGACGTTGGTCTTATTAGGACCACAACTGGAAACCGTGTGTTTGGTGCCCTTAAGGGAGCCTTGGATGGGGGTTTGGATATCCCTCACAGTGAGAAAAGGTTTGCTGGTTTTGATAAGGAGAAGAAGGAGCTTGATCCTGAGGTTCACCGCAAATATATCTTTGGTGGACATGTTGCTGCCTATATGAAGACTTTGGAGGAAGATGAACCAGAGAAATACCAATCACACTTCAGTGAATATATCAAGCGTGGACTCAGTGCCGATGGAATTGAGCCATTGTACAAAAAGGTTCATGCGGCCATTCGTGCAGATCCCACCATCAAGAAGTCAGGGAAGCAGCCACCAAAGGAACACAAAAGGTACAACTTGAAGAAGCTTACATATGAGGAGAGGAAGGCTAAGTTGATTGCACGCCTGCAGGCCCTCAACTCTGCAGCTGGTGGTGAAGATGAGGATGACGATGATGACGAGTGA 909 0.4609 MVYVKAQKGKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQITSASIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYQGNVEASGEDFSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSEKRFAGFDKEKKELDPEVHRKYIFGGHVAAYMKTLEEDEPEKYQSHFSEYIKRGLSADGIEPLYKKVHAAIRADPTIKKSGKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAAGGEDEDDDDDE* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0554 302 Coils Coil 270 290 - -
Ahy19g0554 302 Gene3D - 1 291 - -
Ahy19g0554 302 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Ahy19g0554 302 SUPERFAMILY Translational machinery components 11 252 - -
Ahy19g0554 302 MobiDBLite consensus disorder prediction 250 269 - -
Ahy19g0554 302 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 298 - -
Ahy19g0554 302 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy19g0554 302 CDD Ribosomal_L18_L5e 41 170 - -
Ahy19g0554 302 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 298 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0554 Ahy-Chr19 7259408 7261967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0554 1 292 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.849 0.0 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0554 K02932 - gmx:100805868 532.717