Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0414 ATGAGCAATGAGATCGCACAGATGCCTCCCCCTTCCACTCTCGGTTGCAGGTTCAATGCTATGCTCAAGCAGCGCGACGACGAGCTCAGGGCCACCGCCGGTCACGTGCCGCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTGCAATCAGAAGCTCATTATCACCGATCTCACCTTGATCGCTGTACACCAGAGGGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTCAAGGTGCCTGCAGAGCAAAAGCTTCCTTCAATCTATCTCTTGGACAGTATAGTGAAGAACTTTGGAGAGGAATATGGACAGGAATATGTTAGATACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGGCACCTGGTCAGAAGTCTTTCCACCGTCTGCCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAGGTAACTGCGGCAGTTGGAGCTCTCAACTGTGGATAG 552 0.529 MSNEIAQMPPPSTLGCRFNAMLKQRDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNQKLIITDLTLIAVHQREHARGIADAICARILKVPAEQKLPSIYLLDSIVKNFGEEYGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHLFGTWSEVFPPSALRKIEAELQLSQVTAAVGALNCG* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0414 183 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 174 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy19g0414 183 SMART 558neu5 43 169 IPR006569 -
Ahy19g0414 183 Pfam CID domain 57 162 IPR006569 -
Ahy19g0414 183 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 174 - -
Ahy19g0414 183 ProSiteProfiles CID domain profile. 40 172 IPR006569 -
Ahy19g0414 183 CDD CID_Pcf11 45 168 - -
Ahy19g0414 183 Gene3D - 37 170 IPR008942 -
Ahy19g0414 183 SUPERFAMILY ENTH/VHS domain 39 168 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0414 Ahy-Chr19 4941632 4943554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0414 17 179 C2H2 Transcription Factor Family AT4G04885 64.848 3.45e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0414 K14400 - ahf:112776805 370.548