Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0304 ATGATGGCATTCAAAGGTTCCAAGAACAAATTTGATCATGAGCATAAACCTAAACCTAAACGACAAAAGTCACTTGAAGCTCCAAAGGAGCCTCGACGACCGAAAACTCATTGGGACCATGTATTAGAAGAGATGGTGTGGTTGTCAAAGGACTTTGAATCAGAGAGGAAATGGAAACTTGCTCAGGCCAAGAAAGTTGCTTTGAGAGCCAGCAAAGGCATGTTAGATCAGGCTACCAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAACGCTTACGAAAAGTTGCGCTAAATATTTCTAAGGATGTTAAGAAGTTCTGGACAAAAATAGAAAAGCTGGTTCTTTATAAGCATCAAATGGAGCTTGACGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGGTACTCGTCAATGCTGGCAAAGAATCTTGTGGATCCTTATAAACCGGTTGAGAAAAGTTCTGCTGAGCATCACATGAGTAGTCAATACAAGGATATAGATACAGACATTATTAATGAACCCGAGGAAGCTGATGTTGAGCATCAGTTGGATGCACCTGATGATGATGAAGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAGGATGAGGCCCATATAACCAAAGAAGAAAGACAAGAGGAATTGGCAGCTTTGAATGATGAAATTGATCTTCCAATTGAGGAGTTACTCAAGCGTTATGGTGGCAGGAATGATGAATCTGCAAGTCAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGATAAAATAGCTAGAAGTAGTGATGAAAATGGAGATGCTTTATGCGCCAATGAAACTGGTACAGGCGACTCTAGCATGGACCCTGGTCGACACTGTGGAGAAAGTGTTGGTGACGTAGCTACTCCAGTAAACAATGGTGATGTTGCTACTCCAATAAATAATCAATCTGAATATGACGATCATCAATCTGAAAATATTAAGGAGGCTTCTAGTGAGATGGCTAATGAAGATACTACCCGTGGCTTTACTGATGAAGAGGATGATGGTGACTTCTTGCAAACAACAGAGGACAAGGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAGTAGATATCATTGATCCCAATGATGAGATTGCATTATTGCAAAAGGAGAGTGACATGCCTATTGAGGAACTACTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGACATGGGGATGAATCTGATTATGCTTCTCCTTTATCTGAGCACCATGAGGACTCTTCAAGCAATGAAGATTCTGGACAGAAGGATGTTGCTGTCCCTATGGAAGAAGATATCAAGTCTGAGAACCTTCCTGCTGTTCAACCTCAGGAAAAAGAATGGGAAGTACCTCATGAAACTTCAGAAAAAGGAGAAGGCGAGTATAATATATCTGACGCAGCTGCTGCAGCAAGATCAGCTCAACCAACTGGAATCACCTTCTCTACAACTAAAGTGCGTACAAAGTTCCCTTTTCTACTGAAGTACTCTCTTCGCGAGTACCAACACATTGGATTAGATTGGCTTGTCACAATGTATGAAAAGAGACTGAATGGAATTTGCGATGAAATGGGGCTTGGCAAAACAATTATGACTATAGCTTTGCTTGCTCATCTTGCTTGTGAAAAGGGAATATGGGGTCCACATCTAATCGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTCAAAATTTTAACTTACTTTGGGAGTGCAAAGGAGCGGAAACATAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTGTGCATAACAACCTATAGATTAGTCATTCAGGATTCCAAAGTTTTTAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAGAGATCAACACTCTTGAATTTCAACTCAAAACGGCGTATTCTCTTGACTGGCACACCATTGCAGAATGATCTCATGGAGCTGTGGTCTCTCATGCATTTTTTGATGCCACATGTCTTCCAATCTCATCAAGAGTTTAAGGATTGGTTTTGCAATCCTATATCTGGGATGGTAGAGGGAGAGGAGAAAGTTAACAAGGAGGTTGTTGATCGCCTGCATAATGTTCTTCGTCCATTCTTACTCCGCCGGTTGAAGCGAGATGTGGAAAAGCAACTTCCATCGAAACATGAGCATGTCATATACTGTAGACTGTCAAAGCGGCAGCGTAATTTATATGAAGACTTCATTGCTAGTTCAGAGACCCAAGCTACTCTTGCAAGTGCCAACTTTTTTGGGATGATTAGTATTATAATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCCTTTGACATGTCGGGTATTGATGCATTAAGTTCTTCTATTTGCTCCATGCTTTTTCCTAATCCCTTTTCAATAGTAGACCTAAAAGGCTTAGGCCTCCTATTTACTCATCTTGAATATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTTCTAGTTTAATCATGGAACGCACTGATAAGGGTGACCTGGAGGTAATTAAGCCTTGGTCAAAATGTCGAAAAAAGCTACAAGGAACAAACATTTTTGAAGAGATCCGCAAAGCAATTTGGGAAGAGAGGTTGAAAGAGGCGAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAGAAAACCCATCTACTCCACAAGCCTAAGGAATCTTGTTACTCTAAAGCATCCTGTATATGATATTCATAGTTAAGGAAACCCTGTTTCATATTTGTACTCATCAAAGCTGGCCGACATTGTTCTATCACCAGTCGAACGATTTCAGAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCCATTCCAGCAGCACGAGCACCCTCTCCAGTTTGCTGGTGCAGCAGAAGTGGGGCAACTGTGTTTCTGCATCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTCACCATTACTGTCACCAATCAGGCCTGCAGTTGTTCGTAGGCAAGTGTATTTCCCAGATAGGCGTCTGATACAATTTGACTGCGGGAAATTGCAAGAACTCGCAATATTGTTGAGGAAATTAAAATCAGAAGGTCACCGTGCTCTGATATTTACCCAGATGACAAAGATGCTTGATGTGCTGGAAGCATTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGATCAACTCAACCAGAAGAGAGGCAGACCTTAATGCAGCGCTTTAACACTAACCCCAAATATTTTCTTTTTATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAACCTAGTTGGAGCTGACACTGTTATTTTTTACGATAGTGACTGGAATCCAGCTATGGATCAACAGGCTCAGGATCGTTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTACAGATTGATTAGTGAAAGCACCATTGAGGAAAATATCTTAAAGAAAGCAAATCAGAAGCGTGCTCTTGACAATCTTGTAATTCAAAGTGGGGGTTATAACACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTCAGATTAAAAATATGCTGGAGAAATCCCAGAACAATGGGGAAGTGTCTGTAACTAATGCAGACCTAGAGGCTGCATTAAAATGTGTGGAAGATGAAGCAGATTATAATGCATTAAAGAAAGTTGAGGAGGAAGATGCTGTTGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTATGGAAATGAAGATGATATGAAGGATGATGAGCCTGCTGAGTTTGGTGAATCTGTGTCCAACTTAAGTAAACAGAATGCAGTAATGTCAAATGGAGATCCCAAGGAAGATGCAATGGCCACTGTTTCTTTAAAAGAAGACGACGTTGACATGTTGGCCGATGTAAAACAGATGGCTGCAGCTGGGCAAGCTATCTCTGCCTTTGAGAATAAGTTGCGTCCTATAGATCGTTATGCCATTCGTTTTCTGGAGCTTTGGGATCCAGTTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAAATGGGATGCTGATTTTGCAACTGAGGCATATCGACAGCAAGTAGAGACCTTGGCTCAACATCAGTTGATGGAGGAACTAGAATATGAAGCTAAACAGAAAGCGGAAGCTGAGGAAGAAAATTCTAAAAAGACTCCTGGTGATTCAAAGCCCAAACCGAAAAAGAAACCCAAGAAAGCAAAGTTTAAATCTCTGAAGAAAGGATCTCTAAACTCTGGCACGAGACCTGTAAAAGAAGAGCCACAGGCAGAGCCAATGACTATAGATGATGATGTTGTCAGTAGTCTTGCTCTTGTATCCCCAAATTCAGCTATGCAGAAAAAACGGAAGAAACCTAAATTTACAAGTGATGGTGAGGAAGAAAAGAGATCAAAGAAGTCAAAAAAATCCAAGAGGGATCTTCCTGATGTTTTTGCTTCAGATTTAGATTCCAACTTATTAGTTATGCATGATGAAAATGCAGAGACTCTGGTTGAGAATGAACAGAAAACGTCAAGCAGAAATAAGATGGGAGGGAAAATATCCATCACTCCAATGCCAGTGAAATGGATCTTGATGATAAAACCAGAAAAAGTGAAAAAGGGAAATCTTTGGTCCAAAGATTGTATCCCACCAGCAGATACTTGGTTACCTCAGGAAGATGCAGTATTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACGCTTTATGGCATGACTGCTGGTGGGGCATATCGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTTAGAGAACTATTCCAGAAATATGTCTTATACTCGGTGGATGCCACAAATAATGAGAAGACAAACAATGCTGGTTCTGGAAAAGCCCTTCTTAAAGTTACAGAGGAGAACATTCGCATGTTGTTAGATGTTGCTTCTGTGCAACCCAATAGGGAATTACTACTGCAGAAGCACTTTTATGCACTGCTTTCTTGTATCTGGAAGCTTTCATCACATGCTGACCGAAGGCAAAATCCATCAGCTACCTCTAATGGTCTCTGTTTTGATAAGAGTTTCTTTAGTTCTGTTGGCCAGCATTCACAGAATTCCTTGAAGAAATCCTCTGAAAGGATGACATTCAGTAATTCGGCCCAGTGCAAGAAGTTAGTAGCTTCTGCACTTGATGACACCAGAGGTAGGCAAGAGAGTGACCAAACCTTACTCTCTAACTGCAGTGAAGACAAACCCATGCAAGTGAGTACAGATCAGATGGATATAACACTGGAGTTCCAGAAAGAGGAGAGTGATGCCTTGCCTTCATTTCCATCTGTTATAAATTTATCAATACAAGATACAGAACTGTTGCCATCTGTAAATAAGCAAACAGGAGAAGATGGTCACTTTAGAGTCTTTACTTCTATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGCATGTAAGGAAGACAGTTCAGCATGGGCTTCGTCAGCATTTCCAACAAATGATACAAGATCCAAACCTGGGTCCAGGATACAATCATTGGGAAAGCAGAAGTTTTCTAACACTGACACTGCTAAGCCTTCTAAGTCAAAGTCTAAAAGAGCCTTCACTGATCCTAGTGAGACAAATCACCAACAGACTGATCCTTCATTCCTCTCAATGCCATCACTTAAAGATCTGAGATTTGATCTCAATGCAGCATCCACTATGGATGACATTGTAGTTGATGATTTGCCTAGTAGCAGTCTGCCCTTTGTCCTCGACGTGGAAAATTCATTTGATGAAACGGAGAGTTTTGGAGCAGTCCCGCATGATTATGTAGCTGGTTTAATCTCAGATCTTGATGATTGCACATCATTCCCAGAATTTAACGACATTGGTTAG 6132 0.4113 MMAFKGSKNKFDHEHKPKPKRQKSLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSSMLAKNLVDPYKPVEKSSAEHHMSSQYKDIDTDIINEPEEADVEHQLDAPDDDEEYDVQSDDESEDDEQTLEEDEAHITKEERQEELAALNDEIDLPIEELLKRYGGRNDESASQESSPEHSEDGDKIARSSDENGDALCANETGTGDSSMDPGRHCGESVGDVATPVNNGDVATPINNQSEYDDHQSENIKEASSEMANEDTTRGFTDEEDDGDFLQTTEDKDDETTLSEEEKLEKVDIIDPNDEIALLQKESDMPIEELLARYKKDLSDDGHGDESDYASPLSEHHEDSSSNEDSGQKDVAVPMEEDIKSENLPAVQPQEKEWEVPHETSEKGEGEYNISDAAAAARSAQPTGITFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGICDEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRSTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMSGIDALSSSICSMLFPNPFSIVDLKGLGLLFTHLEYSMTSWESDEVQAIETPSSLIMERTDKGDLEVIKPWSKCRKKLQGTNIFEEIRKAIWEERLKEAKERAAAIAWWNSLRCKRKPIYSTSLRNLVTLKHPVYDIHS*GNPVSYLYSSKLADIVLSPVERFQRMTDVVESFMFAIPAARAPSPVCWCSRSGATVFLHPSYKQKCSEVLSPLLSPIRPAVVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLQIKNMLEKSQNNGEVSVTNADLEAALKCVEDEADYNALKKVEEEDAVDNQEFTEEAIGRLEEDEYGNEDDMKDDEPAEFGESVSNLSKQNAVMSNGDPKEDAMATVSLKEDDVDMLADVKQMAAAGQAISAFENKLRPIDRYAIRFLELWDPVIDKTALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYEKWDADFATEAYRQQVETLAQHQLMEELEYEAKQKAEAEEENSKKTPGDSKPKPKKKPKKAKFKSLKKGSLNSGTRPVKEEPQAEPMTIDDDVVSSLALVSPNSAMQKKRKKPKFTSDGEEEKRSKKSKKSKRDLPDVFASDLDSNLLVMHDENAETLVENEQKTSSRNKMGGKISITPMPVKWILMIKPEKVKKGNLWSKDCIPPADTWLPQEDAVLCAVVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLYSVDATNNEKTNNAGSGKALLKVTEENIRMLLDVASVQPNRELLLQKHFYALLSCIWKLSSHADRRQNPSATSNGLCFDKSFFSSVGQHSQNSLKKSSERMTFSNSAQCKKLVASALDDTRGRQESDQTLLSNCSEDKPMQVSTDQMDITLEFQKEESDALPSFPSVINLSIQDTELLPSVNKQTGEDGHFRVFTSIAENRFREAARACKEDSSAWASSAFPTNDTRSKPGSRIQSLGKQKFSNTDTAKPSKSKSKRAFTDPSETNHQQTDPSFLSMPSLKDLRFDLNAASTMDDIVVDDLPSSSLPFVLDVENSFDETESFGAVPHDYVAGLISDLDDCTSFPEFNDIG* 2044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0304 2042 Coils Coil 218 238 - -
Ahy19g0304 2042 Gene3D - 1630 1691 - -
Ahy19g0304 2042 Gene3D - 1024 1275 IPR027417 -
Ahy19g0304 2042 Coils Coil 1445 1465 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 7 37 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 1535 1560 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 189 217 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 1 37 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 375 390 - -
Ahy19g0304 2042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 531 695 IPR014001 -
Ahy19g0304 2042 Pfam SNF2-related domain 542 807 IPR000330 GO:0005524|GO:0140658
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 330 350 - -
Ahy19g0304 2042 PANTHER HELICASE SRCAP-RELATED 14 1936 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 159 188 - -
Ahy19g0304 2042 SMART helicmild6 1086 1169 IPR001650 -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 1456 1473 - -
Ahy19g0304 2042 Gene3D - 764 839 - -
Ahy19g0304 2042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 740 IPR027417 -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 414 481 - -
Ahy19g0304 2042 CDD SF2_C_SNF 1045 1180 - -
Ahy19g0304 2042 Pfam Helicase conserved C-terminal domain 1059 1169 IPR001650 -
Ahy19g0304 2042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 1227 IPR027417 -
Ahy19g0304 2042 SMART bromneu2 26 97 IPR014012 -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 1905 1967 - -
Ahy19g0304 2042 Pfam HSA domain 30 96 IPR014012 -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 414 453 - -
Ahy19g0304 2042 ProSiteProfiles HSA domain profile. 25 97 IPR014012 -
Ahy19g0304 2042 SMART ultradead3 516 707 IPR014001 -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 218 278 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 1474 1490 - -
Ahy19g0304 2042 ProSiteProfiles Myb-like domain profile. 1634 1687 IPR001005 -
Ahy19g0304 2042 PANTHER HELICASE SRCAP 14 1936 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 1456 1560 - -
Ahy19g0304 2042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1060 1210 IPR001650 -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 1908 1941 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 156 390 - -
Ahy19g0304 2042 Gene3D - 490 763 IPR038718 -
Ahy19g0304 2042 Coils Coil 1394 1414 - -
Ahy19g0304 2042 CDD DEXQc_SRCAP 520 740 - -
Ahy19g0304 2042 MobiDBLite consensus disorder prediction 351 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0304 Ahy-Chr19 3531188 3546094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0304 399 810 RAD5 or RAD16-like Gene Family AT5G22750 25.780 1.83e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy19g0304 SNF2_N 6.80E-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0304 - - gmx:100794898 3036.51