Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0213 ATGGATATCACCGACACGCAACGGAATAGTAACACTGAAAGTGATCTATGTCCATTGCTGATGGAGCAGCTGGTATCCCGCAATGATCATCAGCACATAATTGATATTGCAAGGAACAATGATGGGTTATCCAACTCATCTAATAATCAACGCCCTGCAGTGCATGAAAATCAACCTAGTGTCAGCACGGATGTCCATACCCGTGAAACAGCTTCATTTGCTTCACCTAGATTTAGTCCTAGAAGTTCCACATTGACAAGAGGAGAGGGGTACAATCATCGCAGAAGGAGCCCACTAAATTCTGGTCTATGGGTCTCTGTTGAGCTTTTTGTCACTGTGGGTCAGATCATAGCATCTGTTGTTGTCTTGTCAATGTCAAGTGATGAACATCCCCAAGCCCCATTGTTCGCATGGATTGTGGGTTATGCAGCTGGTTGTGTTGCTACTCTTCCTATTCTTTACTGGCGATATCAAAACTATAATCAAATTGCGGAACCAGATATATCTCAATCATCTCAAGGATCTTCTTTAAGTAACCCTTCAGAAACTACTTATACTGCCATATCTGTTACCCATAATTCGAACAGCGACAATAGTCACACTACAGAATTGTCTGCAGGAAGTGCTAGAATTCCTGGAGTGTTTAGTTCTAGGTTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTCGTAGGCAATGTGTGGATCTTTGGAGGTCACACTTCTCCTTCCGATGCTCCAAAATTGTATAGGTTATGTATAGTCTTCCTTACCTTCAGCTGCATCGGATATGCCATGCCCTTTATACTGTGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTCTTCGGCATTCCTGAGGATTTTTCACCAAACAGAGGAGCCTCAATAGAATCCATTAACGCTCTGCCAATCTACAAGTTCAAATTGAAAAAAAATGAAAATAGTGGTGTTGAGGATGTCAATACCACTGCTGAAGATGACGGTGGAATTTTAGCTGCTGGGACTGAAAAGGAACGGCCTATATCAGGAGAAGATTCTGCTTGCTGCATTTGCTTGGCAAAATATGTAGACAACGACGAACTTCGGGAGCTACCATGCTTTCATATCTTTCATGTAGGATGTATTGATAAATGGTTAAAGATAAATGCATCCTGTCCTCTTTGTAAATATGAAGTTGGTACAAACAATGAAGGGGCACATTCGGCCATGGGTTCCAATCAGCATTAG 1263 0.4181 MDITDTQRNSNTESDLCPLLMEQLVSRNDHQHIIDIARNNDGLSNSSNNQRPAVHENQPSVSTDVHTRETASFASPRFSPRSSTLTRGEGYNHRRRSPLNSGLWVSVELFVTVGQIIASVVVLSMSSDEHPQAPLFAWIVGYAAGCVATLPILYWRYQNYNQIAEPDISQSSQGSSLSNPSETTYTAISVTHNSNSDNSHTTELSAGSARIPGVFSSRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVFGIPEDFSPNRGASIESINALPIYKFKLKKNENSGVEDVNTTAEDDGGILAAGTEKERPISGEDSACCICLAKYVDNDELRELPCFHIFHVGCIDKWLKINASCPLCKYEVGTNNEGAHSAMGSNQH* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0213 420 MobiDBLite consensus disorder prediction 39 94 - -
Ahy19g0213 420 CDD RING-H2_RNF111_like 360 401 - -
Ahy19g0213 420 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 411 - -
Ahy19g0213 420 SUPERFAMILY RING/U-box 355 406 - -
Ahy19g0213 420 Pfam Ring finger domain 359 401 IPR001841 -
Ahy19g0213 420 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 411 - -
Ahy19g0213 420 SMART ring_2 360 400 IPR001841 -
Ahy19g0213 420 MobiDBLite consensus disorder prediction 39 87 - -
Ahy19g0213 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 410 IPR013083 -
Ahy19g0213 420 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0213 Ahy-Chr19 2351271 2355241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0213 1 405 C3H Transcription Factor Family AT1G80400 53.976 1.77e-156 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0213 - - aip:107614650 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0213 19 2351271 2355241 Ahy19g0213 19 2351271 2355241 ECH