LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy19g0084	ATGGCCAACAAGTTTCTGCCATTAATAACAACAACAACAATCATTATTATTATTCTTTCATGGCTTTGTGGAATCCATTGCGAATATGATAGGTCCCGCAAGGGTGAACTCATACATCGCTCATGCAGCTACACCAACATGACAGACCAATATTTGTTATTGAAATATCAAGAGAATTATTGGAATATGGTGAATGAGATGAAAAATGACATGGGTCGATCCAAGTTTTCGGTTAGGGAAGTTGGTGACCCACCATATCGCATACACGTGTTCTCACAATGTAGGTTTGATCTTTCTGCTTCTGAATGCGTGAAGTGCTTCAAATCCCTTCAAAGCGTTTTTCCAAGTTGCTTGCCTGCCAAGGGTGCTCGAACCTTTTCAAGTGATGGCTGTTTTATGCGCTATGATAATTATAGCTTTTTTCGAGAGAGCGTTACCCCTTATTATTTGAGGGGATGTAGTGGTGAGAAAGCAAAAGATGAAAAAGGATTTGTTGGTTTGGCAGTAAATGTAATAAATAAAATGGCATTCGAGGCACCCAAAAAGGATGGCTACACAGCCATAGAAGGACGGCGTCAAGGTTCGAATCTCGTCGTCTATGGTGCGGCCACTTGCTGGAAAACATTGAGCGAGGATTTGTGTGCTGCTTGCCTATCAAATGCTGCTAGCACCGCCATATCATGTTTGCCATCAACACAGGTCCATGTTATCAACACTGGATGCATTTTGCGTTATGCTGATTATGACTTCATTATTGTTGACTTGAAAAACAAACAAAGAGAAATTTTGATGAAATGCACAGCAATTCTTCTTGGTGCAATTGCTATTTGTTCATTGCTTATTGTAGTTGCACACCATGGGACTAAAAATGTTGACAAACTCTGGGGTATTCCAATTTTACGAACAGGACTAGAGATGAACCCAAGTAGAGTAAAATTAAGCTCATGGTTCATGCAGTTCGAGTACTCGACATTAGAGAGAGCAACCAATGTTTTCAATGAATTCCATAAACTTGGTGAAGGGGGATATGGTGAAGTTTACAAGGGAACCTTACAAGATGGAAGAGAAATAGCGATAAAGCGTTTCTTTTTGAGTGGAAAGCAGGGAAAGCAACAAGTTCACAATGAAATTGATGTATATAGCAAAGCTCAACACAAGAATCTAGTTCGGTTCCTTGGTTGCTGCTTCACCTCCACAGAAAGCTATCTGGTTTTTGAATTCCTTGCAAACAAAAGCCTTAACTGCATCTTGTTTGATCCGGAGAAGAAGAAACAGTTGGATTGGCCAAAGAGGCAGGGTATAATCCTTGGCGTAGCTGATGGATTGGAACATCTGCATAGCAATTCTGAAGGGCCAATAATTCATAGAGACATCAAAGCCGGAAACATTTTATTAGACTTGAAATATAGACCAAAGATCTCTGATTTTGGCTTAGCAAAGTTGAAGTCCTATGACTCTACATCTATTGTAGGCACATTGGGGTATATGGCACCGGAATATCTTGCTGGTTGTCCCATAACAGAGAAAGTAGACGTTTACAGCTTTGGAATATTAGTGCTTGAAATTATCAGTGGAGTGGAGAATGCAAAATTTGAGTCTAATGAAGAAACATTTGAGACTCTTGTTTCTCATGCATGGAAGCATTTCAAATCAAACACTACGTCAAAAATTATTGATGAAAGCATGGAAAATCAAGATGTTGAAGAAATTGCAAGAGTTATCCATGTGGGACTTCTGTGTACACAAGAGTTGCCGTATCTGCGTCCCAGCATGACAGAGGTGGTAGCAATGCTTAGACAGAAAGATGTTGTAATGCCAGTACCTTCCAAACCTCCTTTCATGGTTGATTCTTTGGAATTTCCACAAGAAACAGAATCTAGTTGGGAATCGAAAGGTTCAGATGATTCAGAATCGACAGTACCTTTAAATTTTGGAGAAAGAAGTGTGTAA	1950	0.3974	MANKFLPLITTTTIIIIILSWLCGIHCEYDRSRKGELIHRSCSYTNMTDQYLLLKYQENYWNMVNEMKNDMGRSKFSVREVGDPPYRIHVFSQCRFDLSASECVKCFKSLQSVFPSCLPAKGARTFSSDGCFMRYDNYSFFRESVTPYYLRGCSGEKAKDEKGFVGLAVNVINKMAFEAPKKDGYTAIEGRRQGSNLVVYGAATCWKTLSEDLCAACLSNAASTAISCLPSTQVHVINTGCILRYADYDFIIVDLKNKQREILMKCTAILLGAIAICSLLIVVAHHGTKNVDKLWGIPILRTGLEMNPSRVKLSSWFMQFEYSTLERATNVFNEFHKLGEGGYGEVYKGTLQDGREIAIKRFFLSGKQGKQQVHNEIDVYSKAQHKNLVRFLGCCFTSTESYLVFEFLANKSLNCILFDPEKKKQLDWPKRQGIILGVADGLEHLHSNSEGPIIHRDIKAGNILLDLKYRPKISDFGLAKLKSYDSTSIVGTLGYMAPEYLAGCPITEKVDVYSFGILVLEIISGVENAKFESNEETFETLVSHAWKHFKSNTTSKIIDESMENQDVEEIARVIHVGLLCTQELPYLRPSMTEVVAMLRQKDVVMPVPSKPPFMVDSLEFPQETESSWESKGSDDSESTVPLNFGERSV*	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy19g0084	649	Gene3D	-	146	250	IPR038408	-
	Ahy19g0084	649	Gene3D	-	34	140	IPR038408	-
	Ahy19g0084	649	ProSiteProfiles	Protein kinase domain profile.	332	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy19g0084	649	ProSiteProfiles	Gnk2-homologous domain profile.	35	140	IPR002902	-
	Ahy19g0084	649	Gene3D	Phosphorylase Kinase; domain 1	302	407	-	-
	Ahy19g0084	649	MobiDBLite	consensus disorder prediction	615	649	-	-
	Ahy19g0084	649	Gene3D	Transferase(Phosphotransferase) domain 1	408	611	-	-
	Ahy19g0084	649	MobiDBLite	consensus disorder prediction	620	649	-	-
	Ahy19g0084	649	ProSiteProfiles	Gnk2-homologous domain profile.	146	250	IPR002902	-
	Ahy19g0084	649	SUPERFAMILY	Protein kinase-like (PK-like)	315	627	IPR011009	-
	Ahy19g0084	649	SMART	serkin_6	332	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy19g0084	649	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 43-RELATED	13	631	-	-
	Ahy19g0084	649	Pfam	Protein kinase domain	332	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy19g0084	649	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Ahy19g0084	649	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	13	631	-	-
	Ahy19g0084	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Ahy19g0084	649	Pfam	Salt stress response/antifungal	54	138	IPR002902	-
	Ahy19g0084	649	Pfam	Salt stress response/antifungal	157	248	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy19g0084	Ahy-Chr19	780016	784228	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy19g0084	56	618	Receptor kinase-like Gene Family	AT4G28670	46.723	4.85e-176	513

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Ahy19g0084		Pkinase	3.00E-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy19g0084	-		-	aip:107614699	1306.97