Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2954 ATGGAGAACACCACCAACACCAACAACAACCACCCTCACCAGCAGGCCCAATCGAGCCCATACCCAGGCCCACCAACACTCCCACCACCTCCCACCACCACCACCGTCGTCCCCGGAGGCGCACCACCACCGTCCTCCGCCGCACCATTCCACCACCTCCTCCAGCAACAACAGCAACAGCTTCAGATGTTCTGGTCTTACCAGCGCCAAGAAATCGAACACGTCAACGACTTTAAGAACCACCAGCTTCCATTGGCGCGCATCAAGAAGATCATGAAGGCCGACGAAGACGTTCGCATGATCTCCGCCGAAGCCCCAATCCTCTTCGCCAAAGCCTGCGAGCTCTTCATCCTCGAGCTCACGATCCGTTCATGGCTTCACGCCGAAGAGAACAAGCGAAGGACACTTCAGAAGAACGACATCGCCGCCGCCATTACGCGAACCGACATCTTCGATTTCTTAGTTGATATTGTTCCCAGGGACGATATCAAGGACGATGCGGCGGCGCTCGGCGGAATTGTGGCTGCTGCGGCGGCGGCTACTGCCAGTGGTGTTCCGTACTATTATCCGCCCATGGGCCAGCCCGCGGGCCCGCCTGGCGGCATGATGATTGGCAGGCCCGCAGTGGACCCGGCAACGGGGGTTTACGTGCAGCCGCCGTCGCAGGCGTGGCAGAGTGTTTGGCAGACTGCTGCGGAGGATGGCAACTATGGGAGTGGCGCCACCGCCGCTCAAGGGAATCTTGATGGACAGAGCTGA 759 0.5982 MENTTNTNNNHPHQQAQSSPYPGPPTLPPPPTTTTVVPGGAPPPSSAAPFHHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDIKDDAAALGGIVAAAAAATASGVPYYYPPMGQPAGPPGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTAAEDGNYGSGATAAQGNLDGQS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2954 252 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 252 - -
Ahy18g2954 252 MobiDBLite consensus disorder prediction 18 45 - -
Ahy18g2954 252 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 9 252 - -
Ahy18g2954 252 MobiDBLite consensus disorder prediction 1 17 - -
Ahy18g2954 252 MobiDBLite consensus disorder prediction 1 49 - -
Ahy18g2954 252 Gene3D Histone, subunit A 49 160 IPR009072 GO:0046982
Ahy18g2954 252 Pfam Core histone H2A/H2B/H3/H4 69 145 IPR007125 GO:0003677
Ahy18g2954 252 SUPERFAMILY Histone-fold 41 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2954 Ahy-Chr18 134607807 134611949 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2954 47 251 CCAAT-HAP5 Transcription Factor Family AT3G48590 84.615 8.65e-110 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ahy18g2954 CBFD_NFYB_HMF 2.80E-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2954 - - csv:101213576 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2954 18 134607807 134611949 Ahy8g2703 8 50513685 50517612 hybridization