Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2912 ATGATGTCGTCGTCTTGGGCATCAATGGAAGCTGAGAGAGAACACCAACAACAAACCCACAACGACCATGATTTCACTTCCTTATGTTCTTTCAACAATAACTTGCCTTTCATGGAGGTTGATGATGTCAATGACATCATGACGATGATGACGATGATGAGAGACATGTCTAACTTCTTCCCTGAACCAGACACCACCAACAACAACAACCTCGTACTCCTTCATCATCACTCATCATCATCTTCTTCTTCTTCTTCTTCGTCATCACACCTTCAATGCTTTCTCCCTCCTCCTCCTCCACCAAACCCATTTGACATGCCTACCATGGCTTCCTTCCTTGACCCTCATCAAGCTTCCATAACCGCCACTACTGATTTTGGAGGTTTTCATCATCACAACTTGGAGGAACTAGGTTCTTGTTCTTCTTCTGGAAAGCCCGCACCACCACCACCACCACCACCACCACCACTGTTCTTCAACAGATCCAAGATTCTGAGGCCGCTTGATGATTCTCTACCTTCATCTGGAGCACAACCAACTCTGTTTCAGAAGAGAGCAGCACTCAGAAAAAACAACTCCTCATCACAACAACAACAACAAGGTGGTGTTCTTGGAGAAGGTGATAACAATAATAATAGTATGAAGAGAAAGGTGATGATGGAGATGGAAGATAATGGAAGCTTTGATGGGTCATCGGCATTCAACTATGATTCCGGCGATGACTTGATTGAAACCAATAACAAGAAGAATAATCAGAAAGGAGGTGGTGCCAAGAATAAGAAAGGGATGCCGGCCAAGAACTTGATGGCGGAGCGCCGTCGCCGGAAGAAGCTCAATGATAGGCTCTACATGCTCAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATATTAGGAGATGCAATTGAATATCTGAGGGAACTGCTGCAGAGAATCAATGAGCTTCATAATGAATTGGAATCATCACCATCAACAACAACAACTACTACTAATTCTGGAAGTAGTTCACTCATCACAGCAGTACCAACAGTAGTAGCCTCATCAAGCTTTTATCCATTGACACCAACTCCACCATCACTCCCAACCCGCATTAAAGAAGAGATTTGCCCCACTTCACTTCCTAGTCCCAATGCTCAACCTCCTAGGGTTGAGGTGAGGTTGAGAGAAGGAAGGGCAGTGAACATTCACATGTTTTGTGGTCGGAAAGCAGGGCTTCTGCTGTCAACAATGAGGGCATTGGACACACTTGGCTTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGTTTTGCTTTGGATATTTTCAGAGCTGAGCAATGCAAAGAAGGTCAAGATGTGCATCCAGAGCAAATCAAGGCAGTGCTCTTGGATACAGCTGGGTACCCTGCCATCATCTAA 1410 0.4482 MMSSSWASMEAEREHQQQTHNDHDFTSLCSFNNNLPFMEVDDVNDIMTMMTMMRDMSNFFPEPDTTNNNNLVLLHHHSSSSSSSSSSSSHLQCFLPPPPPPNPFDMPTMASFLDPHQASITATTDFGGFHHHNLEELGSCSSSGKPAPPPPPPPPPLFFNRSKILRPLDDSLPSSGAQPTLFQKRAALRKNNSSSQQQQQGGVLGEGDNNNNSMKRKVMMEMEDNGSFDGSSAFNYDSGDDLIETNNKKNNQKGGGAKNKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLRELLQRINELHNELESSPSTTTTTTNSGSSSLITAVPTVVASSSFYPLTPTPPSLPTRIKEEICPTSLPSPNAQPPRVEVRLREGRAVNIHMFCGRKAGLLLSTMRALDTLGLDIQQAVISCFNGFALDIFRAEQCKEGQDVHPEQIKAVLLDTAGYPAII* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2912 469 MobiDBLite consensus disorder prediction 76 92 - -
Ahy18g2912 469 Coils Coil 301 325 - -
Ahy18g2912 469 MobiDBLite consensus disorder prediction 76 107 - -
Ahy18g2912 469 MobiDBLite consensus disorder prediction 144 160 - -
Ahy18g2912 469 PANTHER BHLH TRANSCRIPTIONAL FACTOR 93 466 - -
Ahy18g2912 469 Gene3D - 257 326 IPR036638 GO:0046983
Ahy18g2912 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
Ahy18g2912 469 MobiDBLite consensus disorder prediction 135 161 - -
Ahy18g2912 469 Pfam Helix-loop-helix DNA-binding domain 269 311 IPR011598 GO:0046983
Ahy18g2912 469 SMART finulus 268 317 IPR011598 GO:0046983
Ahy18g2912 469 MobiDBLite consensus disorder prediction 1 21 - -
Ahy18g2912 469 CDD ACT_UUR-ACR-like 398 458 - -
Ahy18g2912 469 MobiDBLite consensus disorder prediction 239 264 - -
Ahy18g2912 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 325 IPR036638 GO:0046983
Ahy18g2912 469 MobiDBLite consensus disorder prediction 187 212 - -
Ahy18g2912 469 CDD bHLH_AtAMS_like 265 323 - -
Ahy18g2912 469 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 93 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2912 Ahy-Chr18 133991325 133996550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2912 160 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 60.900 6.28e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy18g2912 HLH 3.20E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2912 - - vra:106778861 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2912 18 133991325 133996550 Ahy18g2912 18 133991325 133996550 ECH
Ahy18g2912 18 133991325 133996550 Ahy8g2667 8 50007980 50012753 hybridization
Ahy13g2938 13 118548949 118554133 Ahy18g2912 18 133991325 133996550 PCT
Ahy3g2599 3 116242220 116246511 Ahy18g2912 18 133991325 133996550 PCT
Ahy18g2912 18 133991325 133996550 Ahy13g2938 13 118548949 118554133 PCT
Ahy18g2912 18 133991325 133996550 Ahy3g2599 3 116242220 116246511 PCT