Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2908 ATGCCTCTCGTTTCTTCTCTTTTCTCTTTTGATCCAATAACACAACAACATCAACATCCTTCCAGCATGTATTTCGCCAAATTACAGGACTCTCCCATGTTCCGCCAACAGCTGCAGACCATGGAAGAAGGTGCAGAATCGTTACGTGCCAGATGCTGGAGATTCTACAAAGGGTGTAAAAAGTACACGGATGGGCTTTTAGATGCATGTGATGGAGACTTCACCTTTGCAAGTGCCCTCGAAAATTTTGGGGGAGAACATTCTGATCCTTTATTTGTAACTTTGGGAGGGCCTGTTATGACCAAATTCTCTATGGCTTTGAGAGACATCAGTACATTCAAGGACGCTCTTAGGACACAGGAAGCTCGAAAGCGTTTTGACAAGGCTTCCATTGCATATGACCAGGCACGGGAGAAGTTTATGTCATTGAGGAAAAGTACTAGGCAGGATATCGTCATTGCAATAGAGGAGGAATTGCACAATGCAAGAAGCTCATTTGAAGAAGCCCGTTTCAATCTGATTAGTGCTCTTCACAATGTCGAGGCCAAAAAAAGATTCGAGTTTTTGGAGGCTGTCACTGGAGTAATGGATGCTCATCTTCAATATTTTCGACAGGGATATGAACTACTACATCAGTTGGAGCCCTTCATTGTTGAGGTTTTGTCATATGTACAAAAAGCAAGGGAAAGTCACAATGAGGAGCAGGTTTCTCTATTTGAAAGAATGATAGAGTACAAGCAACTTGTCCATCAAGAAAGTAAGTTGTCCTTGAAGGGATTTTATGATTCTCCTGGTCGAGACTCTCCATTTTCTAGGATATCAAGTGATGTGTTAGATGCAGTAACAGAATCTGTCAAAACCGGAAAGGTTCAAACCATTCGAGAAGGGTTTCTCTCAAAACGATCCAGCAATTTAAGAGGCGATTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGCAAACCATTGACTCTCTTCCATGGTGCCAACTCACAGAAGAGTCATCATACCTTTGATAATTCTTCTGGCATTTTGAGTCGGTTGATATCTTCACATATTCATGGAGCCAATGATGAAAAGCCCGTTGCTCGTCATACGGTGAACTTGCTTACATCAACAATCAAGGTTGATGCGGAACAGACAGATTTAAGATTCTGCTTTAGGATTGTTTCTCCTTCAAAGGTTTATACATTGCAGGCAGAAAATGCCCTGGACCAAAGGGATTGGATGGAAAAGATAACCGGAGTAATTGCATCCTTGCTCACTATACACACACTGGGAAAGCCTCAGCCTGTAATTTCTCGCTCAGAAGGTGGTGACTGGGATTCTGCCAGCCCAACTGATTCAGTACAAAGTTCTTCTGATGATGAAATGGCAGTAAATTCAGGTTTGGCATGCAAGATCACCCCCAAGTCAAATAGGTCACCTAATGGCTTGCAGAAGCATAAACACAGTATAAAATGTGAAAAGCCAATCGATGTTCTTCGAAGGGTTAATGGGAATGACAAATGTGCTGATTGTGGTAAATCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCTGGTGTTCATCGAAATCTTGGTGTACATATATCCAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGATTCCTCAGTTTTAAGCATGTTTCAATCACTTGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGTTATTGCATTCGAAAACTTCAACAGATGATACTCTTGATGGATCATCTAAGGGCACCAGAACCAAATTATTTCATGCAAGAAAACCTGCATATGATGATCCCATTTCACTAAAGGAGAGGTTCATCCATGCAAAGTATTCTGAGAAAGTCTTCGTTCGCCGGATACCAAACAACAATCGTCTCCGTACAGTGGCACAACTGGTCTGGGAAAGCATCTTTGCCAATGACAAGAAATCAGTGTACCGGCATATTGTGAGATCCAGTGTGGATATCAATGCTTTAAATTTAAATGGTCAATTTGATGGAAATTCTTTTGCCACGCCTTCTTCAAGTCACTCAAGCATGTCATCTGAAACTGAAAGCCAACTAATGGAGGACATAAAAGATGGCTCAAGTGTGCTTCACTTGGCATGCCTTGTATCTGATGCTGGAATGGTGGAGCTGCTCCTACAGTATGGTGCAGATATAAATGCAGTTGATTCAATTGGTCGAACACCATTACATTACTGCATGTTTAGAGGGAAGATTGCAACTGCAAAATTACTTATTTTAAGGGGGGCCAATACACATGTAGTAGATAAACAAGGAAAGACTCCTCTCATGCTTGCATCAGAACCTAGCAGTGAAATTGTTGGTCTCATATCAAGCAGATGA 2391 0.4161 MPLVSSLFSFDPITQQHQHPSSMYFAKLQDSPMFRQQLQTMEEGAESLRARCWRFYKGCKKYTDGLLDACDGDFTFASALENFGGEHSDPLFVTLGGPVMTKFSMALRDISTFKDALRTQEARKRFDKASIAYDQAREKFMSLRKSTRQDIVIAIEEELHNARSSFEEARFNLISALHNVEAKKRFEFLEAVTGVMDAHLQYFRQGYELLHQLEPFIVEVLSYVQKARESHNEEQVSLFERMIEYKQLVHQESKLSLKGFYDSPGRDSPFSRISSDVLDAVTESVKTGKVQTIREGFLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPLTLFHGANSQKSHHTFDNSSGILSRLISSHIHGANDEKPVARHTVNLLTSTIKVDAEQTDLRFCFRIVSPSKVYTLQAENALDQRDWMEKITGVIASLLTIHTLGKPQPVISRSEGGDWDSASPTDSVQSSSDDEMAVNSGLACKITPKSNRSPNGLQKHKHSIKCEKPIDVLRRVNGNDKCADCGKSEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFQSLGNLFANSVWEELLHSKTSTDDTLDGSSKGTRTKLFHARKPAYDDPISLKERFIHAKYSEKVFVRRIPNNNRLRTVAQLVWESIFANDKKSVYRHIVRSSVDINALNLNGQFDGNSFATPSSSHSSMSSETESQLMEDIKDGSSVLHLACLVSDAGMVELLLQYGADINAVDSIGRTPLHYCMFRGKIATAKLLILRGANTHVVDKQGKTPLMLASEPSSEIVGLISSR* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2908 796 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Ahy18g2908 796 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Ahy18g2908 796 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Ahy18g2908 796 CDD BAR_SFC_plant 37 216 IPR035670 -
Ahy18g2908 796 Gene3D Arfaptin homology (AH) domain/BAR domain 26 117 IPR027267 -
Ahy18g2908 796 Gene3D Arfaptin homology (AH) domain/BAR domain 118 251 IPR027267 -
Ahy18g2908 796 ProSiteProfiles Ankyrin repeat region circular profile. 708 739 - -
Ahy18g2908 796 Pfam BAR domain of APPL family 118 235 - -
Ahy18g2908 796 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Ahy18g2908 796 ProSiteProfiles Ankyrin repeat region circular profile. 741 773 - -
Ahy18g2908 796 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Ahy18g2908 796 SUPERFAMILY Ankyrin repeat 707 784 IPR036770 -
Ahy18g2908 796 SMART ANK_2a 741 770 IPR002110 GO:0005515
Ahy18g2908 796 SMART ANK_2a 708 737 IPR002110 GO:0005515
Ahy18g2908 796 CDD PH_ACAP 294 428 - -
Ahy18g2908 796 ProSiteProfiles PH domain profile. 291 424 IPR001849 -
Ahy18g2908 796 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 23 788 - -
Ahy18g2908 796 SMART 5bar 27 219 IPR004148 GO:0005515|GO:0005737
Ahy18g2908 796 Gene3D - 283 431 IPR011993 -
Ahy18g2908 796 Gene3D - 686 793 IPR036770 -
Ahy18g2908 796 SMART PH_update 292 426 IPR001849 -
Ahy18g2908 796 MobiDBLite consensus disorder prediction 438 461 - -
Ahy18g2908 796 Pfam Putative GTPase activating protein for Arf 498 632 IPR001164 GO:0005096
Ahy18g2908 796 SUPERFAMILY BAR/IMD domain-like 28 314 IPR027267 -
Ahy18g2908 796 SUPERFAMILY ArfGap/RecO-like zinc finger 495 633 IPR037278 -
Ahy18g2908 796 Pfam Ankyrin repeats (3 copies) 713 790 IPR002110 GO:0005515
Ahy18g2908 796 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 638 IPR001164 GO:0005096
Ahy18g2908 796 SUPERFAMILY PH domain-like 204 423 - -
Ahy18g2908 796 PANTHER CENTAURIN/ARF 23 788 IPR045258 GO:0005096
Ahy18g2908 796 CDD ArfGap 498 625 - -
Ahy18g2908 796 MobiDBLite consensus disorder prediction 446 461 - -
Ahy18g2908 796 SMART arf_gap_3 495 638 IPR001164 GO:0005096
Ahy18g2908 796 Pfam PH domain 293 423 IPR001849 -
Ahy18g2908 796 Gene3D Arf GTPase activating protein 477 638 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2908 Ahy-Chr18 133883230 133893513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2908 507 632 C2H2 Transcription Factor Family AT4G05330 41.732 6.50e-21 93.2