Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2900 ATGCCTTTTGAAGTAATGAACCAGAGGGGCGTTTCGACCTCGTCTCACTTTTACGACGACATCTCCTTTCCTCCAGAGAAGAATCCTGGATTACGGAAGCAAAAATCTATTCACGAGCGATACCCGCAAGGAAAGAGTGAGATCACAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCGTGGAATGAATGCAAAAACAGGCTTGCCGATGTCGCAGACTGGTTTATCTTCCGAAGGCACAGGAAGCACACGTTTCGGTGGTAAAGAAGGCATTGCAGATGTGCTGAAGGATTCCAAGGAGTTACTTAACTATCATCCAAGATCATGGACTGATGTGCGTATGCAGCCGGCATCTAGCTCGTATGGTTTCATTGGGAACAAGATTGTCGCCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCAAGTTCATTGTCTGATATGTTTACTCAAAAGTTGAGATTAATGGGGAATGATGTTTTCCGGGATCAGTCTGTTTCCGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTCAAGAAATTGAGGCTGACACTATTGGGAATCTTCTTCCTGATGAGGATGACCTGTTTTCTGGTGTTGCTGATGAGTTAGGATCCAATGTTCATGCCAAAGCAAATGATGATTTCGAAGATTTTGATTTGTTTAGCAGTGGGGGAGGCATGGAGTTAGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAGCCAGCGGCTTAGAAGGAGATCTTGGTTATTTCGGAGGTTCCAAAGGAAAAATTCCTTTTGGTGACCAATCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGATGACTCTGAGCTGAAGACTCTCTTCGAGCAATATGGAGATATCCGAACCATGTATACCGCTTGCAAGCCTCGCGGTTTTGTCATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTCCAACATAAGTCGTTGAGATCTCGAAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTGGTCATGGTGGTGTGATGATATCTGGTCTTGATTCATCTGTTTCAAATGAGGAACTTAAGCATATTTTCGCATTATATGGAGAAATTAAAGAAATATATGAATCTCCTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCAGAAGCTTCTCTTGGTGCTTCGAACAGGATCTGCATTCCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGAAATGCTATTCTAATGCAGCAGTCTCAAAAGGGACAAGAAGAACCAGATTTTGTTCATAATCTTAGTGATAACTTATTAAGACAGAACGCAACATCTTCTGGAGCAGCCACATCTGGTGGCAGCTTGGAGAGTGGATATAATCAGGGGTTTCAATCTGCAAAAAGGATACCTCTGAATGGTTTTGTTGATAATGCATTATATCCTGTGGGTTCTAGCATACCAAAGATGGCAAGAGGGGCTTCTGGTGGAAAAGTATCCGGAGTTTACGAGTCTGCAAATGTTGTTGATGCAATGAAACTGGGATCTATTACAAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATGGTTTAGCTAGTGGTAGTCCCTACAACTTTTCAAACCCCATCAGCAATGTTGCTGCCAGTATTGGAACTGGATCGACAGAATTGTCGGACAGCAGGCATATTCAGGGGATTGGCTCACCTGGCAACCTAGCTGAATTTAATGCAGTAGGAAACGGGAGCCGCCCGCCTCAGGGACTTTATCATATGTGGAACAACTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCATAAAACACCACCATCCTTTATTAATGGTGCTGGTGCTCCTGGTGTTCCGCAGATGCCCGGCTTTCCTAGAACACCACCTCATGTGCTGAGATCATCACAGATAGACCATCATGTCGGATCAGCACCGGTCGTTACTGCCTCACCCTGGGAAAGACAGCCTTCTTACTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCGAATGGGATCTTTAGGAAGTACAGGTTTTCATGGTTCTTGGCAGATGCATCCTCCGGACTTGTCTTCTCGCAACATGTTTTCTCATGTGGGTGGGAACAGTACAGAATTGTCATCCAGTGCTGGGCAGGGATCTCCTAAGTTGTCACATTTTTTCCCAGGGAGACTTCCCATGAATTCAATGCTGAAGTTTGATTCGGCCAATGAACGGATGAGAAGCCTCTATCATCGTAGAAGTGAAGCAAATACTAACAGTGCTGATAAAAAGCAATATGAGCTTGATCTAGGCCGCATATTGCGCGGGGAAGATAACCGAACCACACTTATGATAAAAAATATTCCAAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAACATGATTGACCCTGGTCAAATTATTCAGTTCCATCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGTCGCCCCATTCTCTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGAAACAATATTCGAACAAGGCCAGGAAAATCTCGTACGAGTGCTAACGATGAGAATCGCAACCAAGGGAGTTCTTCAGCTGCAGCCGGAGATGAATCTGCTAATGGAGTAGAGTCGTCCTTGAGTTCATCGAAAACCTGA 2907 0.4352 MPFEVMNQRGVSTSSHFYDDISFPPEKNPGLRKQKSIHERYPQGKSEITASPGSILNASSPRGMNAKTGLPMSQTGLSSEGTGSTRFGGKEGIADVLKDSKELLNYHPRSWTDVRMQPASSSYGFIGNKIVANAASRESSLFSSSLSDMFTQKLRLMGNDVFRDQSVSVGSLPEEEPYKSLQEIEADTIGNLLPDEDDLFSGVADELGSNVHAKANDDFEDFDLFSSGGGMELEGDEHLVSGKRASGLEGDLGYFGGSKGKIPFGDQSSRTLFVRNINSNVDDSELKTLFEQYGDIRTMYTACKPRGFVMISYYDIRAAQNAMKALQHKSLRSRKLDIHYSIPKGNAPEKDIGHGGVMISGLDSSVSNEELKHIFALYGEIKEIYESPEVNHVKFIEFYDVRAAEASLGASNRICIPGKQIKLEPGHPRNAILMQQSQKGQEEPDFVHNLSDNLLRQNATSSGAATSGGSLESGYNQGFQSAKRIPLNGFVDNALYPVGSSIPKMARGASGGKVSGVYESANVVDAMKLGSITRFHPHSLPEFHDGLASGSPYNFSNPISNVAASIGTGSTELSDSRHIQGIGSPGNLAEFNAVGNGSRPPQGLYHMWNNSNLHQQPPSNAMLWHKTPPSFINGAGAPGVPQMPGFPRTPPHVLRSSQIDHHVGSAPVVTASPWERQPSYLGESPEASSFRMGSLGSTGFHGSWQMHPPDLSSRNMFSHVGGNSTELSSSAGQGSPKLSHFFPGRLPMNSMLKFDSANERMRSLYHRRSEANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIQFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRTSANDENRNQGSSSAAAGDESANGVESSLSSSKT* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2900 968 SMART rrm1_1 356 424 IPR000504 GO:0003723
Ahy18g2900 968 SMART rrm1_1 797 875 IPR000504 GO:0003723
Ahy18g2900 968 SMART rrm1_1 271 339 IPR000504 GO:0003723
Ahy18g2900 968 MobiDBLite consensus disorder prediction 928 968 - -
Ahy18g2900 968 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 967 - -
Ahy18g2900 968 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 967 - -
Ahy18g2900 968 MobiDBLite consensus disorder prediction 906 968 - -
Ahy18g2900 968 Gene3D - 789 881 IPR012677 -
Ahy18g2900 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Ahy18g2900 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Ahy18g2900 968 CDD RRM1_MEI2_like 269 344 IPR034453 -
Ahy18g2900 968 MobiDBLite consensus disorder prediction 1 56 - -
Ahy18g2900 968 Pfam RNA recognition motif 2 795 891 IPR007201 -
Ahy18g2900 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Ahy18g2900 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Ahy18g2900 968 Gene3D - 249 352 IPR012677 -
Ahy18g2900 968 Gene3D - 355 449 IPR012677 -
Ahy18g2900 968 CDD RRM3_MEI2_like 798 883 IPR034454 -
Ahy18g2900 968 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
Ahy18g2900 968 SUPERFAMILY RNA-binding domain, RBD 267 429 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2900 Ahy-Chr18 133744809 133752636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2900 265 444 Eukaryotic Initiation Factors Gene Family AT3G16380 22.388 1.43e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2900 - - aip:107612925 1665.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2900 18 133744809 133752636 Ahy18g2900 18 133744809 133752636 ECH
Ahy13g2951 13 119212747 119220623 Ahy18g2900 18 133744809 133752636 PCT
Ahy3g2613 3 116893837 116901558 Ahy18g2900 18 133744809 133752636 PCT
Ahy18g2900 18 133744809 133752636 Ahy13g2951 13 119212747 119220623 PCT
Ahy18g2900 18 133744809 133752636 Ahy3g2613 3 116893837 116901558 PCT