Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2896 TATATAGATAATAAATTGATTATTAAGGTGGATCCAAGGCATGGAAAGAGGTCACTTTCATTGGAAGAAGCACAAAAGGAGGAAGAAGAACATCATGAACACTTGTTCCCAATTTATTCTGAAAGATCTCAACAAGACATGTCGGCTATGGTTTCTGTCCTCACACAAGTCATGGGAGGAGGCATCCCAAATGACCCTTTAACCCCTTCTCATCAATCTACTAATCACAATGATCAACAATCTCAACCACCATCACAAGATCAAGGGAACATAAGAAGAAGACATTATAGAGGGGTGAGACAAAGGCCATGGGGGAAATGGGCGGCGGAGATTCGAGATCCACAAAAGGCGGCTAGGGTTTGGCTTGGAACTTTTGAAACTGCCGAGGCGGCTGCACTCGCATATGACGAGGCAGCCCTTAGATTCAAAGGAAGCAAAGCTAAACTCAATTTTCCTGAAAGAGTTCAAGGAACTGGCGAATTTGGTAATTATCTCACGAATTTTCAACAAAATAATAGTCACCATCAGATTCAATATCAGAATACAACAACTCAACAAAGTGTTCAATATCCATCACAAGGAATAATGGCAAGTGACGGTGGATTCGATTATAATCAACAGAACATGTATTTTGTTCCGTCTCATTATCAACACTATTCATCATCTTCTTCTTCATCTTCCGAACCACCACATCAACATTATAACCAACAACAAGAACTTATGAGATCATATTCATTGCAATATGGGGGTTCTTCTTCTTCTAGTGATCATCATTATCATCATCAGCAATATCCTCCTAAGAATTGGAATGATGATGACATGGATGGTAGACAATAA 837 0.3955 YIDNKLIIKVDPRHGKRSLSLEEAQKEEEEHHEHLFPIYSERSQQDMSAMVSVLTQVMGGGIPNDPLTPSHQSTNHNDQQSQPPSQDQGNIRRRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGNYLTNFQQNNSHHQIQYQNTTTQQSVQYPSQGIMASDGGFDYNQQNMYFVPSHYQHYSSSSSSSSEPPHQHYNQQQELMRSYSLQYGGSSSSSDHHYHHQQYPPKNWNDDDMDGRQ* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2896 278 MobiDBLite consensus disorder prediction 260 278 - -
Ahy18g2896 278 MobiDBLite consensus disorder prediction 58 100 - -
Ahy18g2896 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 258 - -
Ahy18g2896 278 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Ahy18g2896 278 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Ahy18g2896 278 PANTHER DNA-BINDING DOMAIN 28 258 IPR044808 GO:0003700|GO:0009873
Ahy18g2896 278 MobiDBLite consensus disorder prediction 66 89 - -
Ahy18g2896 278 MobiDBLite consensus disorder prediction 217 259 - -
Ahy18g2896 278 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Ahy18g2896 278 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Ahy18g2896 278 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Ahy18g2896 278 MobiDBLite consensus disorder prediction 217 278 - -
Ahy18g2896 278 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700|GO:0006355
Ahy18g2896 278 CDD AP2 95 153 IPR001471 GO:0003700|GO:0006355
Ahy18g2896 278 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2896 Ahy-Chr18 133703750 133706115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2896 34 156 AP2-EREBP Transcription Factor Family AT5G61890 67.939 9.56e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy18g2896 AP2 2.40E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2896 - - ahf:112773083 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2352 16 129566496 129568914 Ahy18g2896 18 133703750 133706115 ECH
Ahy18g2896 18 133703750 133706115 Ahy18g2896 18 133703750 133706115 ECH
Ahy13g2957 13 119483643 119486309 Ahy18g2896 18 133703750 133706115 PCT
Ahy3g2618 3 117024474 117026785 Ahy18g2896 18 133703750 133706115 PCT
Ahy18g2896 18 133703750 133706115 Ahy13g2957 13 119483643 119486309 PCT
Ahy18g2896 18 133703750 133706115 Ahy3g2618 3 117024474 117026785 PCT