Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2858 ATGGGTAGATCTCCTTGTTGTGAGAAAGAACACACAAACAAAGGTGCTTGGACCAAAGAGGAAGATCAACGCCTCATCAACTACATCAAGATTCATGGTGAAGGTTGTTGGAGATCTCTTCCCAAAGCTGCTGGTTTATTGAGATGTGGAAAGAGTTGCAGACTGAGATGGATAAATTACCTGAGGCCTGATCTAAAGAGAGGAAACTTCACTGAAGAAGAAGATGAACTCATCATCAACCTTCATAGCTTACTTGGAAACAAGTGGTCTTTAATAGCTGCAAGGTTACCCGGAAGAACAGATAATGAAATAAAAAATTATTGGAACACTCACATCAAAAGAAAACTCTACAGCCGGGGAATTGATCCTCAAACTCACCGGCCGGTTAATGCGACCGGAATCACAGCCACAGCCACAGCCACAGTCGCAGTCGCAACCGAAAACAATAAGAAAAGCAAGGAAAAAAACAATAGCATTATTTTAAGCACCAACATTATTAATGACAACAATAATAACAAGTTTCAATTGGTGAGTGACTTGGTTTGTGAAGATTCATCAAATAGTAGCAGTGGTGTTACCATTGAAGAACAAACATACCCTCTTCATAATCATCATCATCATTGCCAACTCAACTTGGATCTTTCCATTGGTCTTCCCTCTCAACAAAATAACCAAGCTTCTTCAAATTCCATGAACCAAGAAAACAACAACAACAACAAGAAGTTGAAGCAAGAACAAGAAGAAGCACATGGTGTTTTCTATCATCATCAATGGTATGGCAATAGTGATAATAATAATAGTAAGAGTGTATGCTTGTGTTATGGTCTAGGGTTTCAAAGTAACAATAACAAAGTGTGTAGCTGCAAAGGTGCCATTGTTGGTGGTACGGCGGTTACTACAACCGCCGCAGATAATAGCTTGTATAGATTTTACAGACCTATGAATATATAG 951 0.3901 MGRSPCCEKEHTNKGAWTKEEDQRLINYIKIHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPVNATGITATATATVAVATENNKKSKEKNNSIILSTNIINDNNNNKFQLVSDLVCEDSSNSSSGVTIEEQTYPLHNHHHHCQLNLDLSIGLPSQQNNQASSNSMNQENNNNNKKLKQEQEEAHGVFYHHQWYGNSDNNNSKSVCLCYGLGFQSNNNKVCSCKGAIVGGTAVTTTAADNSLYRFYRPMNI* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2858 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy18g2858 316 CDD SANT 69 112 IPR001005 -
Ahy18g2858 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy18g2858 316 CDD SANT 16 61 IPR001005 -
Ahy18g2858 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy18g2858 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy18g2858 316 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ahy18g2858 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy18g2858 316 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Ahy18g2858 316 Coils Coil 228 248 - -
Ahy18g2858 316 SMART sant 13 63 IPR001005 -
Ahy18g2858 316 SMART sant 66 114 IPR001005 -
Ahy18g2858 316 Gene3D - 14 66 - -
Ahy18g2858 316 PANTHER TRANSCRIPTION FACTOR MYB7 1 242 - -
Ahy18g2858 316 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 242 - -
Ahy18g2858 316 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2858 Ahy-Chr18 133264489 133266281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2858 1 228 MYB Transcription Factor Family AT2G16720 60.088 1.34e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy18g2858 Myb_DNA-binding 1.00E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2858 K09422 - gmx:100808083 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2858 18 133264489 133266281 Ahy18g2858 18 133264489 133266281 ECH
Ahy13g2983 13 120314523 120316102 Ahy18g2858 18 133264489 133266281 PCT
Ahy3g2642 3 117644117 117645650 Ahy18g2858 18 133264489 133266281 PCT
Ahy18g2858 18 133264489 133266281 Ahy13g2983 13 120314523 120316102 PCT
Ahy18g2858 18 133264489 133266281 Ahy3g2642 3 117644117 117645650 PCT