Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2683 ATGGTACAGGCAAAGAAGTTCAGAGGTGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAGATTCGCCACCCTCTCCTGAAGAGAAGGGTGTGGCTGGGAACATTTGAGACAGCAGAAGCAGCAGCAAGGGCTTATGATCAAGCTGCGATTTTGATGAATGGCCAAAATGCCAAGACCAATTTCCCTTCAACAAAGAACAACCAACAATCTCATCATCATAATAACAATGCAACAACAACAACTTCTTCTTCTTCTTGCAATGATGATTCTTCTTTCTTGTCTCCCAAGGCACTCTCAGAGCTTCTCAGTGCAAAGCTCAAGAAGTGCTGTGGCAAGGATCCTTCTTCTCCTTCCCTCACTTGTCTCCGCCTCGACGCCGACAACTCCCACATCGGCGTCTGGCAAAAGGGCCCCGGAAGACACTCCGATTCCAGTTGGGTCATGAGGGTTGAGCTTGGCAGCAAGAACCAACAAAAACAACACGAGGGTAATAAGGTCATTTTCCCATCTTCACCAAGTAATAACAACATCAATAGCAGCAGCAACAACAACAACAATAATAATAATGTTGTTGTTATTGGAGAGAATGATGATGAAAATAGAATTGAAGAAGAGAACAGGGTTGCCATGCAGATGATTGAAGAGCTTCTGAATTGGAACAACTATCCATTTGGTAGTTCTTCAAGTAACAATAATAATAATTCTCAGCAGCAACAACAAGAAGATCAGAAAAGGAACCTTCCATGTCACAGTTCTTGA 762 0.4436 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPSTKNNQQSHHHNNNATTTTSSSSCNDDSSFLSPKALSELLSAKLKKCCGKDPSSPSLTCLRLDADNSHIGVWQKGPGRHSDSSWVMRVELGSKNQQKQHEGNKVIFPSSPSNNNINSSSNNNNNNNNVVVIGENDDENRIEEENRVAMQMIEELLNWNNYPFGSSSSNNNNNSQQQQQEDQKRNLPCHSS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2683 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 222 - -
Ahy18g2683 253 MobiDBLite consensus disorder prediction 58 90 - -
Ahy18g2683 253 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Ahy18g2683 253 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Ahy18g2683 253 MobiDBLite consensus disorder prediction 224 253 - -
Ahy18g2683 253 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Ahy18g2683 253 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Ahy18g2683 253 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Ahy18g2683 253 MobiDBLite consensus disorder prediction 155 193 - -
Ahy18g2683 253 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Ahy18g2683 253 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Ahy18g2683 253 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Ahy18g2683 253 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2683 Ahy-Chr18 129951654 129953069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2683 1 220 AP2-EREBP Transcription Factor Family AT5G25390 54.091 2.73e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy18g2683 AP2 2.60E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2683 - - lang:109326202 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2683 18 129951654 129953069 Ahy18g2683 18 129951654 129953069 ECH
Ahy13g2201 13 43668537 43670390 Ahy18g2683 18 129951654 129953069 ECH