Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2652 ATGGATTCCTCTGATGAACCTTCATCATCACCACTACTTTCTGATTCTTCCAATAATCTCAACAATAATAATGATGATCTAGAATCTTCCAAGAACAAGAACAATGAAGACACTACTACTATTCCCTCCCCTTTTGAATCCTCCAATCCCAGCATCAGCAATGATGTAGAAAATTCATCTCCATCAAAGCATCATCATGATCATGATCTTAATGATGATGATTACTTTCTTGGTGAATCATACACACCAGAGCTTGTTCTGTCACCAGAAACCCAATCAATCTTATTAAGTGGCCTACGTATTGGAGACGATGGTGATGTTCTTGAAGATCTTTGTGATAACAACTTCGAATTTAATGTGGAATCATCACAAGAATGGAGAGATTCCAATTTGTTTGCAGATGAGATTCTAGGAATCGAACCTTCCCTTGATCATTATTGTTCAACCTACCCCACGGGTAATGAAGAGGACATTGACCTTATAGAAACAGTGCAATCTGAAGATGAAGTGAATAATAGAAACCTTGTAATAATTGATGCACCAATTCAGGAAGAGGAAGCACCAAACTTCAAGTTGAAGCCTTTTGGTTTGCATTTGAATAGCATCATAAAATCTACAAAAAGGGTTCAACCTGAGACACATGAAAATGTTGTAGTTGGGAGTAGTAGTAGTAATAATAAAATAAAAAGCATTTTGATCTCACAAGGTAGCAATGGAAAATCAGTAGTAAGAGTTGTTGTTGATGAGACTCAGATCCATCAAGACACCACTTCCAATGATAGTGTTCCCATTTCTCATGATCTTAACAAGAGAATAATCCAAGACAGTAGTGAGAGTAATAATGGTTGTACATGTAAGAAGAGTGCATGCTTGCTCCTGTACTGTGAATGTTTTGCTGCTAAAGGTTATTGTGCAGAATGTTGTACTTGTGAAGGATGCTTAAACAGAGAAGAACATGAAGACAAAGTTAATGATGCTAGGGACAAAATCAAATCTCGTAATCCATTTGCATTTTCTCCTGAGATGGTTCCACAACCCACTCACATTCCATCGGCTAGTAACCAAGAAGAAGAAGATGAAGCAGGCAAAGATACATCAAGAGAATCGAAACCAAGTAAATTCTTCACTTATTTGCCACGTGTCGGTTTAGTAGAATCAAACACCATCAGCACTAATTCTACAAAACATGATGCTGGTGATGACAACATTTATAAAGAGAAACTTAACCAAACTGGTGGAGGATGCAAAAAACATGCATCAAACACAAGTGATGGTAAAAGAGCATGTACATGTAAGAAGAATAAATGTCTGAACCTTTATTGTGAATGTTTTCATGGTGAAATCTACTGTTCTGAGGCTTGTGCTTGCGAAGGGTGCTTAAATAGAGAAGAACATTTACACAAAATTCATGAAGCTAAGGAATATATCAAAAGGCATTATCCATTAGCATTTGCTCCAAGGATTCTTCAAACTCATCTTTCCTCCCCCAATAATATGGATAATGAAAATGTTAAGACAGCAACAGCATCATCATCAGCAAAGCACAGAAGAGGTTGCAGATGCAAAAATTCAAATTGTATGCAGAACTATTGTGAATGTTTTGAGATTGAGGTTGGATGCTCCAGTCTTTGTGAATGCAAGGAATGCAAAAATCCACATGGCAAGAACAAAGATTCAGGTCATAAGCAAGATGCAGAAATGGATGGCAATGAAGAGCAAATAGTCCCACCTCCATCAACATGA 1743 0.3718 MDSSDEPSSSPLLSDSSNNLNNNNDDLESSKNKNNEDTTTIPSPFESSNPSISNDVENSSPSKHHHDHDLNDDDYFLGESYTPELVLSPETQSILLSGLRIGDDGDVLEDLCDNNFEFNVESSQEWRDSNLFADEILGIEPSLDHYCSTYPTGNEEDIDLIETVQSEDEVNNRNLVIIDAPIQEEEAPNFKLKPFGLHLNSIIKSTKRVQPETHENVVVGSSSSNNKIKSILISQGSNGKSVVRVVVDETQIHQDTTSNDSVPISHDLNKRIIQDSSESNNGCTCKKSACLLLYCECFAAKGYCAECCTCEGCLNREEHEDKVNDARDKIKSRNPFAFSPEMVPQPTHIPSASNQEEEDEAGKDTSRESKPSKFFTYLPRVGLVESNTISTNSTKHDAGDDNIYKEKLNQTGGGCKKHASNTSDGKRACTCKKNKCLNLYCECFHGEIYCSEACACEGCLNREEHLHKIHEAKEYIKRHYPLAFAPRILQTHLSSPNNMDNENVKTATASSSAKHRRGCRCKNSNCMQNYCECFEIEVGCSSLCECKECKNPHGKNKDSGHKQDAEMDGNEEQIVPPPST* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2652 580 Coils Coil 17 37 - -
Ahy18g2652 580 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 357 566 - -
Ahy18g2652 580 ProSiteProfiles CRC domain profile. 279 342 IPR005172 -
Ahy18g2652 580 MobiDBLite consensus disorder prediction 59 75 - -
Ahy18g2652 580 MobiDBLite consensus disorder prediction 551 569 - -
Ahy18g2652 580 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 70 357 - -
Ahy18g2652 580 MobiDBLite consensus disorder prediction 353 370 - -
Ahy18g2652 580 MobiDBLite consensus disorder prediction 333 370 - -
Ahy18g2652 580 MobiDBLite consensus disorder prediction 1 58 - -
Ahy18g2652 580 ProSiteProfiles CRC domain profile. 425 554 IPR005172 -
Ahy18g2652 580 MobiDBLite consensus disorder prediction 551 580 - -
Ahy18g2652 580 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 517 551 IPR005172 -
Ahy18g2652 580 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 427 462 IPR005172 -
Ahy18g2652 580 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 281 316 IPR005172 -
Ahy18g2652 580 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 70 357 IPR044522 GO:0003700
Ahy18g2652 580 MobiDBLite consensus disorder prediction 1 76 - -
Ahy18g2652 580 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 357 566 IPR044522 GO:0003700
Ahy18g2652 580 SMART CXC_2 424 465 IPR033467 -
Ahy18g2652 580 SMART CXC_2 278 319 IPR033467 -
Ahy18g2652 580 SMART CXC_2 514 555 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2652 Ahy-Chr18 129394838 129399172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2652 427 554 CPP Transcription Factor Family AT3G04850 42.188 3.16e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Ahy18g2652 TCR 6.20E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2652 K21776 - gmx:547664 189.889