LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy18g2637	ATGAAAAGAAAAATGAGAAGGCGTGGAAAGAAGGTATTTGCAAGATTGTGTGGTGGTGCCCGTGGTGGTGACGACGACGAGGACGAAGAAGACACCTTTCCTGAGAGCCAAAGGAGGGATCACATTGCGGAGTTTGATTATGAAGGAAGCCAATACAGCCTCGCCGGTCTTCCTCTTCCCTCGCTCGGCTCCACTTCCCACAGACTCAAGCTCCGTCCTTACATTGTTTCTCCCTTCAACCACAATTACAGACTTTGGCAGACATTTCTGGTGTTCTTGGTGTTCTATAATGCATGGGTTTGTCCCTTTGAATTTGCATTCCTTAACCAAAAAATGGTCGCAATCTTCGTAGCTGACAATGTTGTCAATGGATTCTTTGCTGTTGACATTGTTCTCACCTTCTTTGTTGCATACCTAGACAAGACTACCTATTTGCTAGTTGATGATAAAAGCCTAATTGCTTTGAGGTATGCCAAATCATGGTTGGCTTTAGATGTCATCTCCACTATCCCCTCTGAAGTTGCTCATAGGTTTTTGCCCGCTGCCCTGAAAAAATATGCTTACTTCAACATGCTTCGCCTTTGGCGTCTTCGCCGAGTCAGTGCCTTGTTTGCAAGATTAGAGAAGGACAGGCATTATAATTACTTCTGGGTTCGCTGCTCAAAACTGATCTGTGTTACATTATTCGCAGCTCATTTTGCTGCTTGCATTTTCCATTTTATCACTCTGAATCGTGAAACCGGACAAACATGGCTTTCGCTTCTTCCGGAAGTCGATGATCATAGTGTCACAAATCTCTATATAGCATCAATTTACTGGTCCATAGCAACTCTTACAACGGTTGGTTATGGAGATCTACATCCTACGAACACAAGGGAGACTCTTTTTGATACTTTCTATATGCTCTTCAATCTTGGGCTAACTGCATATCTCATAGGTAACATGACAAATTTGGTCGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACAATTCAAGCTGTGACAAGTTTTGCCAAACGGAATAAATTGCCTGTTCTCATGCAAGAACAGATGATTGCACATTTGCATATGAAGTACAGAACTGATATAGAAGGGCTGCAGCAGCAAGAGATTATCGAATTACTCCCGAAAGCTATTCGTTCTAGCATCTCTCATTACCTATTCTATGAACTTTTGGAGGATATCTACTTGTTTAATGGGGTGTCACATGATCTGCTTTTTCAACTGGTCTCAGAGATGAAGCCCGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCACCAACAGACTTCTATGTATTGGTCACTGGTGCTGTGGAAGTTATTCTCAAAGGACAGAATAGAACTGAACAGGTAGTTGGTGAGATAAAGGCAGGAGAATTAGTTGGAGAAGTTGGAGTTTTATGTTACAGGCCCCAGATGTTTACAGTTCGGACCAAACGATTGTGCCAACTTCTGCGCTTGAGCCGGACTACATTTATAAATCTTGCTCACTCCAATGTTGGAGATGGGACAATTATGATGAACAATTTTCTTAAGCATTTGCATGAATCCCAGGCACCAGGAATGGATATTATTTTCCGAGAGACAGAGGCCATGCTGGCACGTGGTAAATTGGATTTGCCTATCAGCACATGCTTTGCAGTAAACCGAAATGATGATATATTGTTGCAACGGCTGCTGAAGAAGGGTATGGATCCAAATGAAGGCGACCCAGATGGAAGGACACCGCTGCATATTGCAGCTTCTAAAGGCAATGAGAAGTGTATATCTGTGCTTCTGGAATATGATGCTGATCCCAACATCAGAGATAAGGAAGGAAATCTTCCACTGTTTGAAGCACTTATAAGTGGTAACGACTCCATTGTGAAACTCCTTCTGGAGCATGGTGCAGTGTTAGAACCTGCCGATGCAGGCCACCTGGCATGCATTGCTGTTGAGAAAAATAGCATGGAACTGCTCAATAGAATTTGTCAATATGGTTGGGATGTGACACAACCCACACACAATGGAACCACTGCTCTTCACACTGCAGTGTGTGAAGGAAACCTCCAAATGACAAAGTTCCTTGTCGAAAAAGGAGCCAACATTGATCTGCAAGACGCTACCGGCTGGACTCCAAGGACCTTGGCGGATCAACAAGACCATGATGAAATCAAAAGTATGTTTCAGAAGATTGGAGAGAGGACAGGTCCAATTCCTGCTGCTATTCCACCATCAAATCGCAAGCACTTGCCTAACCTTGGAAGGTACCAAAGTGAACCAACTATGCGTAGTATTCCCCAAACAAACATTGGACAGTTCCACTCGCCACGCAATCCAGAAGATATGTTCTTTGACAATACTAAAAGAAGAAGAAACAACAATTTTAACAATTCCATTTTTGGGATGATGTCGGCAGCTAACCATAATCAAAGAGAGCGTGAGGCATCCAAAAAATTTAACAATCATAGGTTGAACAAGGATGACTTTGTTGGCAGATTGACATTAAGTTGTCCTGAAAAGGGTGAACATGCTGGAAAGCTTGTTATGCTGCCAAATACCATTCAGGAACTGCTAGATATTGGAGCTAAAATGTTTGACTTTACTGCTGTCAAAATTTTGACCAAAGAAGGAGCTGAAGTGGATGACATAAATCTCATAAGAGATGGTGATCATCTTATTATTGCACATAAATGA	2694	0.4235	MKRKMRRRGKKVFARLCGGARGGDDDEDEEDTFPESQRRDHIAEFDYEGSQYSLAGLPLPSLGSTSHRLKLRPYIVSPFNHNYRLWQTFLVFLVFYNAWVCPFEFAFLNQKMVAIFVADNVVNGFFAVDIVLTFFVAYLDKTTYLLVDDKSLIALRYAKSWLALDVISTIPSEVAHRFLPAALKKYAYFNMLRLWRLRRVSALFARLEKDRHYNYFWVRCSKLICVTLFAAHFAACIFHFITLNRETGQTWLSLLPEVDDHSVTNLYIASIYWSIATLTTVGYGDLHPTNTRETLFDTFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKYRDTIQAVTSFAKRNKLPVLMQEQMIAHLHMKYRTDIEGLQQQEIIELLPKAIRSSISHYLFYELLEDIYLFNGVSHDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYVLVTGAVEVILKGQNRTEQVVGEIKAGELVGEVGVLCYRPQMFTVRTKRLCQLLRLSRTTFINLAHSNVGDGTIMMNNFLKHLHESQAPGMDIIFRETEAMLARGKLDLPISTCFAVNRNDDILLQRLLKKGMDPNEGDPDGRTPLHIAASKGNEKCISVLLEYDADPNIRDKEGNLPLFEALISGNDSIVKLLLEHGAVLEPADAGHLACIAVEKNSMELLNRICQYGWDVTQPTHNGTTALHTAVCEGNLQMTKFLVEKGANIDLQDATGWTPRTLADQQDHDEIKSMFQKIGERTGPIPAAIPPSNRKHLPNLGRYQSEPTMRSIPQTNIGQFHSPRNPEDMFFDNTKRRRNNNFNNSIFGMMSAANHNQREREASKKFNNHRLNKDDFVGRLTLSCPEKGEHAGKLVMLPNTIQELLDIGAKMFDFTAVKILTKEGAEVDDINLIRDGDHLIIAHK*	898

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy18g2637	897	ProSiteProfiles	Ankyrin repeat region circular profile.	675	706	-	-
	Ahy18g2637	897	CDD	CAP_ED	399	513	IPR000595	-
	Ahy18g2637	897	MobiDBLite	consensus disorder prediction	1	37	-	-
	Ahy18g2637	897	ProSiteProfiles	Ankyrin repeat region circular profile.	578	610	-	-
	Ahy18g2637	897	ProSiteProfiles	Ankyrin repeat profile.	578	610	IPR002110	GO:0005515
	Ahy18g2637	897	ProSiteProfiles	Ankyrin repeat profile.	675	707	IPR002110	GO:0005515
	Ahy18g2637	897	ProSiteProfiles	KHA domain profile.	832	897	IPR021789	-
	Ahy18g2637	897	PRINTS	EAG/ELK/ERG potassium channel family signature	130	139	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ahy18g2637	897	PRINTS	EAG/ELK/ERG potassium channel family signature	311	320	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Ahy18g2637	897	PRINTS	EAG/ELK/ERG potassium channel family signature	267	284	IPR003938	GO:0005249\|GO:0006813\|GO:0016020

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy18g2637	Ahy-Chr18	129018815	129025092	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy18g2637	35	895	Ion Channels	AT2G25600	54.857	0.0	937

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy18g2637	K21867		-	gmx:100802964	1119.76

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy18g2637	18	129018815	129025092	Ahy18g2637	18	129018815	129025092	ECH
	Ahy18g2637	18	129018815	129025092	Ahy8g2404	8	46664974	46670994	hybridization

Showing 1 to 2 of 2 entries