Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2591 ATGGCGGAAGATAATAACGAAGTCACACAAACATTTAAGGATTTGGGATTATCTGAGGAATTGGTGGAAACTTGTGATAAATTAGGTTGGAAAAATCCATTGAAGATACAATCAGAAGCGATTCCTCTTGCACTACAAGGAAAAGATGTGATTGGACTCGCCCAAACGGGTTCTGGAAAAACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCACGCCCCAATGATTTCTTCGCATGTGTGTTGTCTCCCACAAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTTTAGGGTCTGGGATCGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATCGACATGGTACAGCAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTCGGAACACCAGGACGCGTTTTAGATCACCTCAAAAACACCAAGGGATTTTCTCTTAATAGATTAAAATATTTGGTCCTAGATGAGGCGGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTATACAATTGATTCCTCGTGAGCGGAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCCTCTAAGTATTCTACTGTTGACACACTGAAGCAGCAATATCGTTTCTTACCTGCCAAACACAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGTACATGTGATTCAACTCGTCTTCTTGCTTTGATTCTTAGTAATCTTGGTCTAAAAGCCATCCCAATTAATGGTCATATGACCCAGTCAAAAAGGCTTGGAGCCTTGAATTTATTCAAGTCTGGGGCTCGCAATATTCTCATTTGTACTGATGTAGCTAGTAGAGGATTGGATATTCCAACAGTAGATGTTGTGATTAACTATGACATCCCCACAAACTCCAAAGATTATATACATCGTGTAGGAAGGACTGCTCGTGCAGGGCGTTCTGGGGTTGCAATTTCCCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATAGAGAAACTTATAGGTGAGAGTAGTAGTATATTCTTTAACATGTATTTATTAAGGCTGGGAACATTGTCTAAAGTCGTCAATGCAACTAATATTTCAGGCAAGAAGCTACCAGAATATCCTGCACAAGAAGAGGAAGTTCTACTTTTGGAAGAGCGGGTTAGCGAGGCCAAACGATTATCAGTAATGAAAATGAAGGAGGAAGCCATGGGGAAGAAGAAACGGAGAGGTGAATCAGATTATGGCGAAGAAGATATCGACAAATACTTAGGTCTCAAGGATAAGAAATCATCCAAAAAGTTTAGAAGATGA 1407 0.4087 MAEDNNEVTQTFKDLGLSEELVETCDKLGWKNPLKIQSEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNDFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEIIQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILSNLGLKAIPINGHMTQSKRLGALNLFKSGARNILICTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGESSSIFFNMYLLRLGTLSKVVNATNISGKKLPEYPAQEEEVLLLEERVSEAKRLSVMKMKEEAMGKKKRRGESDYGEEDIDKYLGLKDKKSSKKFRR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2591 468 CDD DEADc_DDX47 11 215 IPR044765 GO:0005524
Ahy18g2591 468 PANTHER RNA HELICASE 396 449 - -
Ahy18g2591 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 367 IPR027417 -
Ahy18g2591 468 CDD SF2_C_DEAD 226 355 - -
Ahy18g2591 468 SMART helicmild6 265 346 IPR001650 -
Ahy18g2591 468 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Ahy18g2591 468 Pfam Helicase conserved C-terminal domain 241 346 IPR001650 -
Ahy18g2591 468 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 241 386 IPR001650 -
Ahy18g2591 468 Gene3D - 1 219 IPR027417 -
Ahy18g2591 468 Gene3D - 220 378 IPR027417 -
Ahy18g2591 468 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 214 IPR014001 -
Ahy18g2591 468 PANTHER RNA HELICASE 4 399 - -
Ahy18g2591 468 Pfam DEAD/DEAH box helicase 35 203 IPR011545 GO:0003676|GO:0005524
Ahy18g2591 468 PANTHER BNAC02G41920D PROTEIN 396 449 - -
Ahy18g2591 468 PANTHER BNAC02G41920D PROTEIN 4 399 - -
Ahy18g2591 468 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 160 168 IPR000629 -
Ahy18g2591 468 SMART ultradead3 29 229 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2591 Ahy-Chr18 128100681 128107325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2591 4 368 Eukaryotic Initiation Factors Gene Family AT3G19760 31.707 7.06e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy18g2591 K14777 - gmx:100775796 758.829