Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g2588 ATGCACACGCACTCGTCGATTCGGGATCGCACGCACGAATTCCATACCATCGCCGAGAGGTTGAAGAAATCTTCTTCCTCAAACGGACCCACAACCACTTCCTCCTCATCTGCTGCTTCTTCTTCCAGATCGGATGAACAGCGATCCGCAATCGCAATTCAGTCCGAGTTCAATCGAAGGGCTTCCAAGATTGGCTATGGGATCCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCGAAGAGGACTTCGGTTTTTGATGACCCTACAATGGAAATCCAAGAGCTTACGAGTGTAATCAAGCAAGACATTACTGCGTTGAACTCTGCAGTTGTGGATCTTCAGTTGCTATGCAACTCGAGGAATGAGAGCGGGAACGTTTCTGCCGACACTACCAGCCATTCGACTACTGTTGTAGATGACCTCAAGACCCGTTTGATGAGCACCACCAAGGAGTTCAAAGAAGTTCTCACCATGAGAACCGAGAACTTGAAAGTACATGAGAATAGGAGACAATTGTTTTCGGCCTCTGGTTCTAAGGATGCTGCTAATCCTTTTGTCCGTCAACGGCCATTAGCTACAAGGACGGCTGCTAGTGCTTCTAATGCCCCCGCAGCTCCATGGGCTAGTGGGTCTTCATCTTCATCTGAGTTGTTTCCTAAGAAGCAGGCAGATGGGGAGAGTCAGCCATTGCTACAGCAACAGCAACAACAACAGCAGCAAATGGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCATAATGTTGAATCCACTATTCATGAACTCAGCAATATCTTTAATCAATTAGCAACTCTCGTTTCCCAACAAGGAGAGCTTGCTATCAGAATTGATGAGAACATGGACGATACATTGGCAAACGTAGAAGGTGCACAAGGGGCTCTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTCATGGTTTTCTTATTTTTTGTGGCATAG 1026 0.46 MHTHSSIRDRTHEFHTIAERLKKSSSSNGPTTTSSSSAASSSRSDEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLCNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSASGSKDAANPFVRQRPLATRTAASASNAPAAPWASGSSSSSELFPKKQADGESQPLLQQQQQQQQQMVPLQDSYMQSRAEALHNVESTIHELSNIFNQLATLVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g2588 341 PANTHER SYNTAXIN 6 340 IPR045242 -
Ahy18g2588 341 Gene3D - 52 304 - -
Ahy18g2588 341 MobiDBLite consensus disorder prediction 20 48 - -
Ahy18g2588 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ahy18g2588 341 SUPERFAMILY t-snare proteins 55 304 IPR010989 GO:0016020|GO:0016192
Ahy18g2588 341 MobiDBLite consensus disorder prediction 21 48 - -
Ahy18g2588 341 CDD SNARE_syntaxin5 252 330 - -
Ahy18g2588 341 PANTHER SYNTAXIN-32-LIKE 6 340 - -
Ahy18g2588 341 MobiDBLite consensus disorder prediction 196 247 - -
Ahy18g2588 341 SMART tSNARE_6 244 311 IPR000727 -
Ahy18g2588 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 4 23 IPR021538 -
Ahy18g2588 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Ahy18g2588 341 Pfam SNARE domain 286 337 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g2588 Ahy-Chr18 128040378 128044949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g2588 2 341 SNARE and Associated Proteins AT3G24350 65.193 3.84e-146 415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2588 18 128040378 128044949 Ahy18g2588 18 128040378 128044949 ECH
Ahy18g2588 18 128040378 128044949 Ahy8g2356 8 46002801 46007329 hybridization